View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6017_low_4 (Length: 356)
Name: NF6017_low_4
Description: NF6017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6017_low_4 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 2 - 356
Target Start/End: Complemental strand, 26653195 - 26652840
Alignment:
| Q |
2 |
tcatgttcaatttcactaccttagtcaattaaaatatacattcatgttggtgtgttagccacacctccgtgtttgctattaagttgttttcttggaatgt |
101 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26653195 |
tcatgttcaatttcactaccttagtcaatgaaaatatccattcatgttggtgtgttagccacacctccgtgtttgctattaagttgttttcttgcaatgt |
26653096 |
T |
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| Q |
102 |
tgagcttcttcatagtatctt-ctaatgcttgttcattcatcatgggtataacactcaactttcaaaacaaaaatggttacattgcttaatttggaaagg |
200 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26653095 |
tgagcttcttcatagtatatttctaatgcttgttcattcatcatgggtataacactcaactttcaaaacaaaaatggttactttgcttaatttggaaagg |
26652996 |
T |
|
| Q |
201 |
ctacgttattggccacaaaaattgtactacagtgtataccaagggaaaatgaatggtgaatgtgtgaaaaccccaatgtatcctttgttgctagtaattc |
300 |
Q |
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| T |
26652995 |
ctacgttgttggccacaaaaattgtactacagtgtatacgaagggagaatgaatggtgaatgtgtgaaaaccccaatgtatcctttgttgctagtaattc |
26652896 |
T |
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| Q |
301 |
tcacattaaagaaggtgccatttcaattaagtttaggggcaattttgtgtttttcc |
356 |
Q |
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| T |
26652895 |
tcacattaaacaaggtgccatttgaattaagtttaggggcaattttgtgtttttcc |
26652840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 356
Target Start/End: Complemental strand, 26646277 - 26646179
Alignment:
| Q |
258 |
gaatgtgtgaaaaccccaatgtatcctttgttgctagtaattctcacattaaagaaggtgccatttcaattaagtttaggggcaattttgtgtttttcc |
356 |
Q |
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| T |
26646277 |
gaatgtgtgaaaacccagatgtatcctttgcttctagtaattttcaaaacaaacaatgtgccattttaattaagtttaggggcaattttgtgtttttcc |
26646179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 26646459 - 26646345
Alignment:
| Q |
113 |
atagtatcttctaatgcttgttcattcatcatgggtataacactcaacttt-caaaacaaaaatggttacattgcttaatttggaaaggctacgttattg |
211 |
Q |
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||||||||||| |||| ||||||||||||||||||||| ||||||| |||| |||| ||||||||||| ||| |||| |||||||||||| ||| |
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| T |
26646459 |
atagtatcttccaatgtttgttcattcatcatgggtatcacactcagctttaaaaaaaaaaaatggtta-----ctttctttgcaaaggctacgttgttg |
26646365 |
T |
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| Q |
212 |
gccacaaaaattgtactaca |
231 |
Q |
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| T |
26646364 |
gcaacaaaatttgtagtaca |
26646345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19849034 - 19848924
Alignment:
| Q |
1 |
ttcatgttcaatttcactaccttagtcaattaaaatatacattcatgttggtgtgttagccacacctccgtgttt-gc--tattaagttgttttcttgga |
97 |
Q |
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||||||||||||||||||||||| ||||| ||||||| ||| || || |||| ||||||||||||| ||||| || || ||||||||| ||||| | |
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| T |
19849034 |
ttcatgttcaatttcactacctttatcaatgaaaatatccatccagtatgatgtgctagccacacctccatgtttcgcattagtaagttgttgtcttgca |
19848935 |
T |
|
| Q |
98 |
atgttgagctt |
108 |
Q |
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||| ||||||| |
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| T |
19848934 |
atgatgagctt |
19848924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 20036677 - 20036787
Alignment:
| Q |
1 |
ttcatgttcaatttcactaccttagtcaattaaaatatacattcatgttggtgtgttagccacacctccgtgttt-gc--tattaagttgttttcttgga |
97 |
Q |
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||||||||||||||||||||||| ||||| ||||||| ||| || || |||| ||||||||||||| ||||| || || ||||||||| ||||| | |
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| T |
20036677 |
ttcatgttcaatttcactacctttatcaatgaaaatatccatccagtatgatgtgctagccacacctccatgtttcgcattagtaagttgttgtcttgca |
20036776 |
T |
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| Q |
98 |
atgttgagctt |
108 |
Q |
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||| ||||||| |
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| T |
20036777 |
atgatgagctt |
20036787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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