View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6017_low_8 (Length: 268)
Name: NF6017_low_8
Description: NF6017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6017_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 36693296 - 36693549
Alignment:
| Q |
13 |
attctacaccaatatatatgtaaaaataaaataacaaattcttcatgtaaatcttaatcatattttttacaaaagtttctttctttacttacattaagat |
112 |
Q |
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| T |
36693296 |
attctacaccactatatatgtaaaaataaaataacaaattcttcatgtaaatcttaatcatattttttacaaaagtttct--ctttacttacattaagat |
36693393 |
T |
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| Q |
113 |
taagatgattgattaatttattagttggtaacatgttagcatttaagaactcccattatgtgtcaagtttgtagaaggctagttaattataataacatgt |
212 |
Q |
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| T |
36693394 |
taagatgattgattaatttattagttggtaacatgttagcatttaggaactcccattatgtgtcaagtttgtagaaggctagttaattataataacatgt |
36693493 |
T |
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| Q |
213 |
tgaggtccactactatcactgcatgtttgtggaatttctttttcatcatctgcagc |
268 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36693494 |
tgaggtcccctactatcactgcatgtttgtggaatttctttttcatcatctgcagc |
36693549 |
T |
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