View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6017_low_9 (Length: 260)
Name: NF6017_low_9
Description: NF6017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6017_low_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 21289402 - 21289164
Alignment:
| Q |
18 |
atatggctgttgtgatgaagcaattagatagagctgaagaagctattgaagctatcaaatcttttagaggtctttgcaacaaacattctcaagagtcact |
117 |
Q |
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| T |
21289402 |
atatggctgttgtgatgaagcaattagatagagctgaagaagctattgaagctatcaaatcttttagaggtctttgcaacaaacattctcaagagtcact |
21289303 |
T |
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| Q |
118 |
tgataatgtacttcttgatctttacaaggtatatccaaacattttcaattatcatattaattatggtcattttacttgctctatataattagtaaattat |
217 |
Q |
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| T |
21289302 |
tgataatgtacttcttgatctttacaaggtatatccaaacatgttcaattatcat----attatggtcattttacttgctctatataattagtaaattat |
21289207 |
T |
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| Q |
218 |
cggtctatgttgttttttatttacatgaaaataagatttgatt |
260 |
Q |
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| T |
21289206 |
cggtctatgttgttttttattaacatgtaaataagatttgatt |
21289164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 21252142 - 21252012
Alignment:
| Q |
18 |
atatggctgttgtgatgaagcaattagatagagctgaagaagctattgaagctatcaaatcttttagaggtctttgcaacaaacattctcaagagtcact |
117 |
Q |
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| T |
21252142 |
atatggcagtggtgatgaagcaattagacagatccgaagaagccatcgaagccatctcttcgtttcgaggcctttgctccaaacaatcccaggaatccct |
21252043 |
T |
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| Q |
118 |
tgataatgtacttcttgatctttacaaggta |
148 |
Q |
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| T |
21252042 |
tgataatgtactaattgatctttacaaggta |
21252012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 31817985 - 31817925
Alignment:
| Q |
18 |
atatggctgttgtgatgaagcaattagatagagctgaagaagctattgaagctatcaaatc |
78 |
Q |
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|||||||| |||| ||||||||| |||| ||||||||||||||||||||||| ||||| |
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| T |
31817985 |
atatggctattgttatgaagcaacagaatagggctgaagaagctattgaagctattaaatc |
31817925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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