View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6018_high_2 (Length: 604)

Name: NF6018_high_2
Description: NF6018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6018_high_2
NF6018_high_2
[»] chr7 (8 HSPs)
chr7 (16-600)||(41562126-41562710)
chr7 (269-422)||(46656889-46657042)
chr7 (524-600)||(46656776-46656852)
chr7 (68-184)||(41511369-41511485)
chr7 (68-156)||(48532739-48532827)
chr7 (71-110)||(16490924-16490963)
chr7 (71-109)||(48398546-48398584)
chr7 (466-494)||(46656862-46656890)
[»] chr5 (3 HSPs)
chr5 (62-121)||(32075089-32075148)
chr5 (61-150)||(20155209-20155298)
chr5 (69-109)||(11292348-11292388)
[»] chr4 (1 HSPs)
chr4 (57-121)||(8136517-8136581)
[»] chr8 (2 HSPs)
chr8 (68-111)||(33005114-33005157)
chr8 (68-110)||(3770202-3770244)
[»] chr6 (2 HSPs)
chr6 (68-110)||(845018-845060)
chr6 (68-110)||(870302-870344)


Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 16 - 600
Target Start/End: Complemental strand, 41562710 - 41562126
Alignment:
Q  16 cagcaaacattggccaagttatcattggtacaccgcttgaaattgcttccattgttgaattccaaccacaatgagataaaaatccaccagttgaaggatg 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41562710 cagcaaacattggccaagttatcattggtacaccacttgaaattgcttccattgttgaattccaaccacaatgagataaaaatccaccagttgaaggatg 41562611  T
Q  116 tgacaatatttcaacttgtggagcccatcctttaactataactccttttcctttagtcctctcttcaaaattctcttcttttaaccacttctctaattca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41562610 tgacaatatttcaacttgtggagcccatcctttaactataactccttttcctttagtcctctcttcaaaattctcttcttttaaccacttctctaattca 41562511  T
Q  216 atagaacaatcattttttccaatcacccaaatgaatggatggtttgatgcttccaatcctaaagcaagttcctttagctgtgaagtaggaatgaaagata 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41562510 atagaacaatcattttttccaatcacccaaatgaatggatggtttgatgcttccaatcctaaagcaagttcctttagttgtgaagtaggaatgaaagata 41562411  T
Q  316 aactacctaaacatgcatagatgacagaacaagctttgtttgaaataagaaactttagacatttggtttcggaatcatcgatgaatcccttatcgtcttt 415  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41562410 aactaccaaaacatgcatagatgacagaacaagctttgtttgaaataagaaactttagacatttggtttcggaatcgtcgatgaatcccttatcgtcttt 41562311  T
Q  416 accaaacttgttgaaggttaacttgtcatgcaaggaaagtggtcctatacaccaaacctttttagcaactttctcataacctctaacataaaccttctcc 515  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41562310 accaaacttgttgaaggttaacctgtcatgcaaggaaagtggtcctatacaccaaacctttttagcaactttctcataacctctaacataaaccttctcc 41562211  T
Q  516 agctcctcaaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctcctttccatgcctttg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41562210 agctcctcaaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctcctttccatgcctttg 41562126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 269 - 422
Target Start/End: Complemental strand, 46657042 - 46656889
Alignment:
Q  269 caatcctaaagcaagttcctttagctgtgaagtaggaatgaaagataaactacctaaacatgcatagatgacagaacaagctttgtttgaaataagaaac 368  Q
    |||||||||||||| ||||||||| ||||||| ||||||| |||| |||||||| ||||||||||| |||||||| |||||||||||| |||||| ||||    
T  46657042 caatcctaaagcaatttcctttagttgtgaagaaggaatgtaagacaaactaccaaaacatgcatatatgacagagcaagctttgtttcaaataaaaaac 46656943  T
Q  369 tttagacatttggtttcggaatcatcgatgaatcccttatcgtctttaccaaac 422  Q
    ||||||||||||||||| ||||||| |||| |||||||||||| ||||||||||    
T  46656942 tttagacatttggtttcagaatcattgatgcatcccttatcgtttttaccaaac 46656889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 524 - 600
Target Start/End: Complemental strand, 46656852 - 46656776
Alignment:
Q  524 aaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctcctttccatgcctttg 600  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  46656852 aaaagtattcaccaatattccttgtgctgagagtttagattctttgaattgatcaatagcttctttccatgcctttg 46656776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 41511485 - 41511369
Alignment:
Q  68 tgttgaattccaaccacaatgagataaaaatccaccagttgaaggatgtgacaatatttcaacttgtggagcccatcctttaactataactccttttcct 167  Q
    |||||||||||||||||||||||  |||||||||||| |||||| |||||| |||||  | | |||||| ||||| ||| ||| ||||| |||| | |||    
T  41511485 tgttgaattccaaccacaatgagtcaaaaatccaccaattgaagaatgtgataatatcaccatttgtggggcccaccctctaattataagtcctctccct 41511386  T
Q  168 ttagtcctctcttcaaa 184  Q
    ||| |||| || |||||    
T  41511385 ttattcctttcctcaaa 41511369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 48532827 - 48532739
Alignment:
Q  68 tgttgaattccaaccacaatgagataaaaatccaccagttgaaggatgtgacaatatttcaacttgtggagcccatcctttaactataa 156  Q
    |||||||||||| |||||||| | ||| ||||| ||| ||||||| ||||| ||||||   |||||||||||||| ||| ||| |||||    
T  48532827 tgttgaattccatccacaatgtgttaagaatcctccaattgaagggtgtgataatattagcacttgtggagcccaacctctaattataa 48532739  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 16490963 - 16490924
Alignment:
Q  71 tgaattccaaccacaatgagataaaaatccaccagttgaa 110  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  16490963 tgaattccaaccacagtgagataaaaacccaccagttgaa 16490924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 48398584 - 48398546
Alignment:
Q  71 tgaattccaaccacaatgagataaaaatccaccagttga 109  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  48398584 tgaattccaaccacaatgagttaaaaacccaccagttga 48398546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 46656890 - 46656862
Alignment:
Q  466 accaaacctttttagcaactttctcataa 494  Q
    |||||||||||||||||||||||||||||    
T  46656890 accaaacctttttagcaactttctcataa 46656862  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 32075089 - 32075148
Alignment:
Q  62 ttccattgttgaattccaaccacaatgagataaaaatccaccagttgaaggatgtgacaa 121  Q
    |||| |||||||||||||||||||||||||  ||||||||||| | ||||||||||||||    
T  32075089 ttcctttgttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaa 32075148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 20155298 - 20155209
Alignment:
Q  61 cttccattgttgaattccaaccacaatgagataaaaatccaccagttgaaggatgtgacaatatttcaacttgtggagcccatcctttaa 150  Q
    |||| |||||||||||||| |||||||| |  || ||||| ||| |||||||||| || | ||||  || |||||| |||||||||||||    
T  20155298 cttcaattgttgaattccatccacaatgtgtcaagaatcctccaattgaaggatgagaaagtattaaaatttgtggtgcccatcctttaa 20155209  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 11292348 - 11292388
Alignment:
Q  69 gttgaattccaaccacaatgagataaaaatccaccagttga 109  Q
    |||||||||||||||||||| ||||| |||||||| |||||    
T  11292348 gttgaattccaaccacaatgtgataagaatccacctgttga 11292388  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 8136517 - 8136581
Alignment:
Q  57 attgcttccattgttgaattccaaccacaatgagataaaaatccaccagttgaaggatgtgacaa 121  Q
    |||||||||||||| ||||||||||||||||| | ||| ||||| ||| ||| ||||||||||||    
T  8136517 attgcttccattgtagaattccaaccacaatgtgttaagaatcctccaattgcaggatgtgacaa 8136581  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 33005114 - 33005157
Alignment:
Q  68 tgttgaattccaaccacaatgagataaaaatccaccagttgaag 111  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  33005114 tgttgaattccaaccacaatgtgttaaaaatccaccagttgaag 33005157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 3770202 - 3770244
Alignment:
Q  68 tgttgaattccaaccacaatgagataaaaatccaccagttgaa 110  Q
    ||||||||||||||||||||| | |||||||||||| ||||||    
T  3770202 tgttgaattccaaccacaatgtgttaaaaatccacctgttgaa 3770244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 845018 - 845060
Alignment:
Q  68 tgttgaattccaaccacaatgagataaaaatccaccagttgaa 110  Q
    ||||||||||||||||||||||| |||||| |||||| |||||    
T  845018 tgttgaattccaaccacaatgagttaaaaacccaccaattgaa 845060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 870302 - 870344
Alignment:
Q  68 tgttgaattccaaccacaatgagataaaaatccaccagttgaa 110  Q
    ||||||||||||||||||||||| |||||| |||||| |||||    
T  870302 tgttgaattccaaccacaatgagttaaaaacccaccaattgaa 870344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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