View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6018_low_1 (Length: 633)
Name: NF6018_low_1
Description: NF6018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6018_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 10 - 617
Target Start/End: Complemental strand, 43584289 - 43583680
Alignment:
| Q |
10 |
tcatcataaacaatgacaaacaagtttgtcaattcaatcttgactgctccaaacacaggcttcatcataaacaatgacaaacaaatttgtcaactcaatc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43584289 |
tcatcataaacaatgacaaacaagtttgtcaattcaatcttgactgctccaaacacaggcttcatcataaacaatgacaaacaaatttgtcaactcaatc |
43584190 |
T |
|
| Q |
110 |
cacttcacattgcacatgcatagtgtttgcattatgaacacacaataagaggtctacttgtagccatacattattagtttgcatgtctactaccttattt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43584189 |
cacttcacattgcacatgcatagtgtttgcattatgaacacacaataagaggtctgcttgtagccatacattattagtttgcatgtctactaccttattt |
43584090 |
T |
|
| Q |
210 |
agtctctaaagccactttgattatacaaaaagattatagttcgaccttgctgccttctaacaannnnnnnnccactaacaaattaatcagtgacatttgg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43584089 |
agtctctaaagccactttgattatacaaaaagattatagttcgaccttgctgccttctaacaaatttttttccactaacaaattaatcagtgacatttgg |
43583990 |
T |
|
| Q |
310 |
tnnnnnnng--aagaaagatatatatctcctattgtagaaaagagtagaaaacaaataaattttattaatgacacacaatagaccttcaatcacatagat |
407 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43583989 |
taaaaaaaagaaagaaagatatatatctcctattgtagaaaagagaagcaaacaaataaattttattaatgacacacaatagaccttcaatcacatagat |
43583890 |
T |
|
| Q |
408 |
aaaagagtccaataattaaggctacatatttatagccaaagttcagaatagatgcatatataagataatcaagccttaagaatattgcagaccatgcctc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43583889 |
aaaagagtccaataattaaggctacatatttatagccaaagttcagaatagatgcatatataagataatcaagccttaagaatattgcagatcatgcctc |
43583790 |
T |
|
| Q |
508 |
tcaaaaagtataaacccttggatgggttattataccttaatacaaaacttaattcacatatgatttcctcctcctcctccaccttcactcatatccaccg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43583789 |
tcaaaaagtataaacccttggatgggttattataccttaatacaaaacttaattcacatatgatttcctcctcctcctccaccttcactcatatccaccg |
43583690 |
T |
|
| Q |
608 |
aggaagtatc |
617 |
Q |
| |
|
|||||||||| |
|
|
| T |
43583689 |
aggaagtatc |
43583680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 43584315 - 43584251
Alignment:
| Q |
45 |
aatcttgactgctccaaacacaggcttcatcataaacaatgacaaacaaatttgtcaactcaatc |
109 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
43584315 |
aatcctgaatgctccaaacacatacttcatcataaacaatgacaaacaagtttgtcaattcaatc |
43584251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University