View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6018_low_3 (Length: 391)
Name: NF6018_low_3
Description: NF6018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6018_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 376
Target Start/End: Original strand, 37601900 - 37602265
Alignment:
| Q |
11 |
cataggtcattgaagcatcccaatattgttagatttaaagaggtacttagaggttttaatagtgtcattattatgcatcctatttcttataagaatttat |
110 |
Q |
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| T |
37601900 |
cataggtcattgaagcatcccaatattgttagatttaaagaggtacttagaggttttaatagtgtcattattatgcatcctatttcttataagaatttac |
37601999 |
T |
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| Q |
111 |
ctggtgttattttctttgagctcatgcttgccnnnnnnnnnngttattgaactagtgctttcttttgctacttcataccaactttataaaagtataaatg |
210 |
Q |
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| T |
37602000 |
ctggtgttattttctttgagctcatgcttgctttttttttttgttattgaactagtgctttcttttgctacttcataccaactttataaaagtataaatg |
37602099 |
T |
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| Q |
211 |
taatgagtgctgtatatacagcgtcttttgctgcttcattatgaacatgattctgttttttactattgcatatcattttatttttactttctccttgaaa |
310 |
Q |
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| T |
37602100 |
taatgagtgctgtatatacagcgtcttttgctgcttcatcatgaacatgattctgttttttactattgcatatcattttatttttactttctccttgaaa |
37602199 |
T |
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| Q |
311 |
ggaattccaaaaatctttggaaaacttttaaatttatgccaattcatagttgtacatatgagatgt |
376 |
Q |
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| T |
37602200 |
ggaattccaaaaatctttggaaaacttttaaatttatgccaattcatagttgtacatatgatatgt |
37602265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 39410685 - 39410729
Alignment:
| Q |
11 |
cataggtcattgaagcatcccaatattgttagatttaaagaggta |
55 |
Q |
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| T |
39410685 |
cataggtccttgaagcatcccaatatcattagatttaaagaggta |
39410729 |
T |
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