View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6019_high_11 (Length: 535)
Name: NF6019_high_11
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 34646200 - 34646701
Alignment:
| Q |
18 |
atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646200 |
atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg |
34646299 |
T |
|
| Q |
118 |
agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngacccagtttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
34646300 |
agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacg---gtgttgtgtcaactcctctaataaaaaaagaccccgtttt |
34646396 |
T |
|
| Q |
218 |
ctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646397 |
ctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgat |
34646496 |
T |
|
| Q |
318 |
tcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatc |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646497 |
tcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatc |
34646596 |
T |
|
| Q |
418 |
aacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattag |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646597 |
aacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgtacattttaaaggtgccgatgttgagttgcattctattag |
34646696 |
T |
|
| Q |
518 |
tacct |
522 |
Q |
| |
|
||||| |
|
|
| T |
34646697 |
tacct |
34646701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 34665894 - 34666395
Alignment:
| Q |
18 |
atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34665894 |
atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg |
34665993 |
T |
|
| Q |
118 |
agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngacccagtttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
34665994 |
agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacg---gtgttgtgtcaactcctctaataaaaaaagaccccgtttt |
34666090 |
T |
|
| Q |
218 |
ctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34666091 |
ctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgat |
34666190 |
T |
|
| Q |
318 |
tcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatc |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34666191 |
tcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatc |
34666290 |
T |
|
| Q |
418 |
aacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattag |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34666291 |
aacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatattgagttgcattctattag |
34666390 |
T |
|
| Q |
518 |
tacct |
522 |
Q |
| |
|
||||| |
|
|
| T |
34666391 |
tacct |
34666395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 42 - 527
Target Start/End: Complemental strand, 19649321 - 19648845
Alignment:
| Q |
42 |
gtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatactca |
141 |
Q |
| |
|
|||||||| | |||||||||| ||| ||||||||||||||||| ||||| |||||| ||||||||||| || || ||| | || | ||||| |
|
|
| T |
19649321 |
gtgtctcttacaacacaattgaaatcttcaattggtggtaaattttcttactgtttgttgccattgttggtt---gactcgaacaagacgagcaaactca |
19649225 |
T |
|
| Q |
142 |
gttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngaccc---agttttctactttttgacattacaagc |
238 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||| | | ||||| || |||||||| |||||| ||| |||| |
|
|
| T |
19649224 |
attttggagatgccgctgtggtttctggtgacg---gtgttgtgtcaactccttttgtgaaaaaagaccctcaagctttctactatttgacgttagaagc |
19649128 |
T |
|
| Q |
239 |
atttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgattcaggtacaacattgacactt |
338 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || | || || || ||| || |||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
19649127 |
atttagtgttggaaacaaaagaatagaatttgaag--tgtt----agatgacagtgaggagggtaacatcatacttgattctggtacaacattgactctt |
19649034 |
T |
|
| Q |
339 |
ataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctata |
438 |
Q |
| |
|
|||| || | || |||||||| |||||||| || || | | |||||||||||||||||||||||||||||||||||| ||| | ||| || |||| |
|
|
| T |
19649033 |
ttaccgtctcatgtttatactaatttggaatcggcggtagcacaactggtgaaactagatcgtgttgatgatcctaatcaactattaaacctttgttata |
19648934 |
T |
|
| Q |
439 |
gtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattagtacctatgct |
527 |
Q |
| |
|
|| | | |||| | |||||||||||||||||||||| ||||||||||||||||| ||| || ||||| | | |||||||||| |||| |
|
|
| T |
19648933 |
gtatcacatcagaccaatatgattttcctataatcactgcacattttaaaggtgcagatattaagttgaacccaattagtacctttgct |
19648845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 45645396 - 45645897
Alignment:
| Q |
18 |
atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg |
117 |
Q |
| |
|
||||| ||||||||||| || || |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
45645396 |
atagtgggccttggaggtggaccagtgtctctaataacacaattgggatcatcaattggtggtgaattctcttattgtttggtgccattggataacaagg |
45645495 |
T |
|
| Q |
118 |
agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngaccc---agt |
214 |
Q |
| |
|
|||||||| || | |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||| ||| |
|
|
| T |
45645496 |
agtcaaacacaacgagtaaactcagttttggagatgccgctgtggtttcgggtgacaa---tgttgtgtcaactcctataataaaaaaagacccttcagt |
45645592 |
T |
|
| Q |
215 |
tttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataatt |
314 |
Q |
| |
|
|| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || | ||||||| ||||||||||| |||||| |
|
|
| T |
45645593 |
ttactacgttttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgat---gaaggtaacattataatt |
45645689 |
T |
|
| Q |
315 |
gattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatccta |
414 |
Q |
| |
|
||||||||||||||||||| || ||||| | ||||| |||| || ||||||||||||||||| ||||||||||||||| | ||||| ||||||||| |
|
|
| T |
45645690 |
gattcaggtacaacattgatggttttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaaacgtgtggatgatcctt |
45645789 |
T |
|
| Q |
415 |
atcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctat |
514 |
Q |
| |
|
|| ||| |||| |||||||||||||| || || | ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45645790 |
ataaactattcggcctatgctatagtgcgacattagatgaatatgattttcctctaatcaccgcacattttaaaggtgctgatgttgagttgcattctat |
45645889 |
T |
|
| Q |
515 |
tagtacct |
522 |
Q |
| |
|
|||||||| |
|
|
| T |
45645890 |
tagtacct |
45645897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 446 - 522
Target Start/End: Original strand, 1390710 - 1390786
Alignment:
| Q |
446 |
atcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattagtacct |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||| ||| || ||||||| |||||||| |||| |
|
|
| T |
1390710 |
atcaaatgaatatgattttcctataatcactgcacattttgaaggtgcagatattaagttgcaatctattagcacct |
1390786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 1390499 - 1390533
Alignment:
| Q |
235 |
aagcatttagtgttggaaacaaaagagtagaattt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1390499 |
aagcatttagtgttggaaacaaaagagtagaattt |
1390533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 212 - 520
Target Start/End: Original strand, 14183338 - 14183643
Alignment:
| Q |
212 |
agttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcata |
311 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||||| ||| ||||| | ||||| | ||||||||||||||||| |
|
|
| T |
14183338 |
agttttctactatttgacattggaagcatttagtgttggtaacaaaagaatagaatttgaagggtcttc---aaatggtggtcatgaaggtaacatcata |
14183434 |
T |
|
| Q |
312 |
attgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatc |
411 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||| | || || |||| ||| ||||||||||| ||| |||| ||||||||||| | |||||| |||||| |
|
|
| T |
14183435 |
attgattcaggtacaacgttgacggttattccaactgatgtttataataatttggaatcagcggtgttggaattggtgaaactgaagcgtgttaatgatc |
14183534 |
T |
|
| Q |
412 |
ctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattc |
511 |
Q |
| |
|
| | | | ||| | ||| |||||||| | | |||| ||| |||||||||||||||||| || |||||||||||||||| |||||| |||||||| | |
|
|
| T |
14183535 |
caacccgattatttaacctttgctatagcgtcacatcagatggatatgattttcctataataacgacacattttaaaggtgcggatgttaagttgcatcc |
14183634 |
T |
|
| Q |
512 |
tattagtac |
520 |
Q |
| |
|
||||||||| |
|
|
| T |
14183635 |
tattagtac |
14183643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 40717904 - 40718402
Alignment:
| Q |
18 |
atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg |
117 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||||||| | ||||| ||||||||| |||||||||||||||||| | ||||||| | |
|
|
| T |
40717904 |
atagttggccttggaggtggtcccgtgtctcttataacacaacttggatcgtcaattggttcaaaattctcttattgtttgcttccattgtctctt---g |
40718000 |
T |
|
| Q |
118 |
agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngaccc---agt |
214 |
Q |
| |
|
|||||||| |||| | |||||||||||||||||||||||||||||| ||||| || |||| ||||||||||| || | ||||| ||| |
|
|
| T |
40718001 |
agtcaaacaggacaagcaaactcagttttggagatgccgctgtggtttctggtgagga---tgttttgtcaactcctatagtgaaaaaagaccccacagt |
40718097 |
T |
|
| Q |
215 |
tttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataatt |
314 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| | ||||| | |||| |||||| ||||||||||||||| |
|
|
| T |
40718098 |
tttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttc---aaatggtagtgatgagggtaacatcataatt |
40718194 |
T |
|
| Q |
315 |
gattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatccta |
414 |
Q |
| |
|
|||||||||||||| ||||| || | ||||| | | |||| ||| ||||||||||| |||| || | ||||||||||| |||||||||||||| | |
|
|
| T |
40718195 |
gattcaggtacaacgttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatccaa |
40718294 |
T |
|
| Q |
415 |
atcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctat |
514 |
Q |
| |
|
||||||||| | ||| ||||||||| | |||| | |||| | |||||| |||| || || |||||||||||||| ||| || |||||||| | || |
|
|
| T |
40718295 |
ctcaacaattaaacctttgctatagtaccacatcagacatatataactttcctctaataacagcgcattttaaaggtgcggatattaagttgcatcccat |
40718394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 219 - 517
Target Start/End: Original strand, 14192295 - 14192590
Alignment:
| Q |
219 |
tactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgatt |
318 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| | |||||||||| ||||||| ||| || ||||||| |||| ||||||||||||||||||| |
|
|
| T |
14192295 |
tactatttgacattggaagcatttagtgttggaaatagaagagtagaaattggaggag-ttccaaa--tggtgataatgagggtaacatcataattgatt |
14192391 |
T |
|
| Q |
319 |
caggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatca |
418 |
Q |
| |
|
| ||||||||||| ||| | || || || | || || |||||||| |||||||| ||||||||||| |||| |||||||| ||||||| ||| |
|
|
| T |
14192392 |
cgggtacaacattaacaagtttaacaaaagatgattactcttttttggaatctgctgtggtagatttggtgaagttagaacgtgttgacgatcctactca |
14192491 |
T |
|
| Q |
419 |
acaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattag |
517 |
Q |
| |
|
| ||| | ||| ||||||||| | ||| | | | ||||||||||||||||||||| |||||||||||||| ||||| || |||||| ||||||| |
|
|
| T |
14192492 |
aacattaaacctttgctatagtgtcaaagctgagggatatgattttcctataatcacaatgcattttaaaggtgcagatgtcgatttgcatcctattag |
14192590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 14183147 - 14183233
Alignment:
| Q |
18 |
atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgcca |
104 |
Q |
| |
|
||||||||||||||||| || || | ||||| || |||||||||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
14183147 |
atagttggccttggaggtggaccagcatctcttattacacaattgggatcatcaattgatgcaaaattctcttattgtttgttgcca |
14183233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 14201301 - 14201350
Alignment:
| Q |
225 |
ttgacattacaagcatttagtgttggaaacaaaagagtagaatttggagg |
274 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
14201301 |
ttgacattagaagcatttagtgtgggaaacaaattaatagaatttggagg |
14201350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 14192124 - 14192164
Alignment:
| Q |
57 |
caattgggatcatcaattggtggtaaattctcttattgttt |
97 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
14192124 |
caattgggatcctcaactggtggtaaattctcctattgttt |
14192164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 14201142 - 14201182
Alignment:
| Q |
57 |
caattgggatcatcaattggtggtaaattctcttattgttt |
97 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
14201142 |
caattgggtacatcaattggtggaaaattctcttattgttt |
14201182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 214 - 493
Target Start/End: Original strand, 34303063 - 34303342
Alignment:
| Q |
214 |
ttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataat |
313 |
Q |
| |
|
||||||||| ||||||| || |||||||||| |||||| |||||||||||||||||| ||| || || || |||| ||| ||||||||||||||||| |
|
|
| T |
34303063 |
ttttctactatttgacaatagaagcatttagcgttggagacaaaagagtagaatttgcagggtcctcaaaa---ggtgttgaagaaggtaacatcataat |
34303159 |
T |
|
| Q |
314 |
tgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcct |
413 |
Q |
| |
|
||||||| |||||| ||||| || ||||||| || || |||||||| ||| | ||||| | || |||||||||| |||||| || |||||||||||| |
|
|
| T |
34303160 |
tgattcaagtacaattgtgacatttgtaccatctgatgtttatactaaattgaattcagcaatcgtagatttggtgacactagaacgagttgatgatcct |
34303259 |
T |
|
| Q |
414 |
aatcaacaattcagcctatgctatagtttgaaatcaaat---gaatatgattttcctataatcaccgcacattttaaaggtgc |
493 |
Q |
| |
|
||||||||||| || ||||| || | | | |||| || ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
34303260 |
aatcaacaatttagtctatgttacaatgtttcatcagatgaagaatatgattttccttatatgaccgcacattttaaaggtgc |
34303342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 34302859 - 34302942
Alignment:
| Q |
19 |
tagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgc |
102 |
Q |
| |
|
|||||||||||||||| || || | ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
34302859 |
tagttggccttggaggtggacctgcatctctaataacacaattgggaccgtcaattggtggtaaattctcttattgtttggtgc |
34302942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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