View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_12 (Length: 510)
Name: NF6019_high_12
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 131 - 337
Target Start/End: Original strand, 22042879 - 22043085
Alignment:
| Q |
131 |
atatctctttccaattgaattaaatttccaacagttttagtttgactgcaatatatcatacgtttccttatattggtatgtctatagttaatatttgaat |
230 |
Q |
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| T |
22042879 |
atatgtctttccaattgatttagatttccaacagttttagtttgactgcaatatatcatacgtttcattatattggtatgtctatagttaatatttgaat |
22042978 |
T |
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| Q |
231 |
gcaataatatttataagatgtaaaaggcaagatagggaattttcatgaaagacattgtttacaaaataaaaatattactaaatcatggtactaatttata |
330 |
Q |
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| T |
22042979 |
gcaataatttttataagatgtaaaaggtaagatagggaattttcattaaagacattgtttacaaatttaaaatattactaaatcatggtacaaatttata |
22043078 |
T |
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| Q |
331 |
aacttga |
337 |
Q |
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||||||| |
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| T |
22043079 |
aacttga |
22043085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 436 - 510
Target Start/End: Original strand, 22043259 - 22043333
Alignment:
| Q |
436 |
ttacacaatcgttatcaccgcacaatgtaattagttgatgaggaaatccttgattgatatagttggcgaaatctt |
510 |
Q |
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| T |
22043259 |
ttacacaatcgttatcaccgcacaatgtaattagttgatgaggaaatccttgattgatatagttggcaaaatctt |
22043333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 354 - 432
Target Start/End: Original strand, 22043134 - 22043212
Alignment:
| Q |
354 |
tctgaaccttataatgtcatttgtgttaaagttgttggagattgaaaaagatttccagcctaatggagagtttacttga |
432 |
Q |
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| T |
22043134 |
tctgaaccgtataatgtcatttgtgttaaaattgttggagattgaaaaagatttccagcctaatggagagtttagttga |
22043212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 22042827 - 22042876
Alignment:
| Q |
1 |
tatgtgagatggaataaaagttggagcaggaatgacagaggaataagcat |
50 |
Q |
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| T |
22042827 |
tatgtgagatggaataaaagttggagcaggaatggcagaggaataagcat |
22042876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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