View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_13 (Length: 482)
Name: NF6019_high_13
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 25 - 387
Target Start/End: Original strand, 5417392 - 5417744
Alignment:
| Q |
25 |
taattgaagtaagactgatactacaattgaatattgtcgaatatgactcatagaagtaatgctgcaatccaaacgacatgtattttaatacaagttgtac |
124 |
Q |
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| T |
5417392 |
taattaaagtaagactgatactacacttgaatattgtcgaatatgactcatagaagtaatgctgcaatccaaacgacatgtattttaatacaagttgtac |
5417491 |
T |
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| Q |
125 |
actattgtaaacctatgacattgaaataattgaatatttatattaatttgtaatgcacggtcgatacacattatatataaaattcaattgtaaaattctt |
224 |
Q |
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| T |
5417492 |
actatcgtaaacctatgccattgaaataattgaa----tatattaatttgtaatgcacggtcgatacacattatatataaaattcaattgt-aaattctt |
5417586 |
T |
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| Q |
225 |
cccattttattaaacgtgtatttacaattgaatgtgtttttctagagggtacattgagagtctagcatgggctagacacaacaatgggcttgctacgaag |
324 |
Q |
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| T |
5417587 |
tctattttattacatgtgtatttacaattgaatgtgtttttctagagggtacattgagagtct-gcatgggctacacacaacaatgggtttgctacgaag |
5417685 |
T |
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| Q |
325 |
agttgctcctatatagttttggtttttgtgaggaagacatcatggaaactattggaaacaact |
387 |
Q |
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| T |
5417686 |
agttgctccaatatagtgttggtttttgttagga----atcatggaaactattggaaataact |
5417744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 385 - 464
Target Start/End: Original strand, 5421739 - 5421818
Alignment:
| Q |
385 |
actacaagatttctatattgcagctcaaagcgtagacatggagtattggcatgaaaatcttccttgcaaaaaggagcatg |
464 |
Q |
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| T |
5421739 |
actataagatttctatattgcaactcaaagcgtagacatggagtattggcatgaaaatcttccttgcaaaaaggagcatg |
5421818 |
T |
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