View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6019_high_16 (Length: 459)

Name: NF6019_high_16
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6019_high_16
NF6019_high_16
[»] chr4 (2 HSPs)
chr4 (13-445)||(46404678-46405110)
chr4 (177-239)||(33538179-33538241)
[»] chr2 (1 HSPs)
chr2 (113-288)||(23972356-23972532)


Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 13 - 445
Target Start/End: Original strand, 46404678 - 46405110
Alignment:
Q  13 aatataccttctaatttgtgttgctttggtgcgtaaaaggggggaaagtaccataaatctcattgtaattagctcctgctctactctatctctctctgct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404678 aatataccttctaatttgtgttgctttggtgcgtaaaaggggggaaagtaccataaatctcattgtaattagctcctgctctactctatctctctctgct 46404777  T
Q  113 catccaaatttcatttattttctggttgctatagtgctaggctggctgtcttcaatatttaattgtttgattaaaatggctaggcatgtatattattatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404778 catccaaatttcatttattttctggttgctatagtgctaggctggctgtcttcaatatttaattgtttgattaaaatggctaggcatgtatattattatt 46404877  T
Q  213 cttttctcttggcccttctaaagatgcaaatttctttgtgaacacagcacaataattattagcatgtaatcagaaatgatttgttcgtccaatacaactg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404878 cttttctcttggcccttctaaagatgcaaatttctttgtgaacacagcacaataattattagcatgtaatcagaaatgatttgttcgtccaatacaactg 46404977  T
Q  313 tgattgtatgctccagcttgtaagtatacaaacgtcccacatgggaattattgggtgcacaaattcccttctcctttaagcatgttataataatacacat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404978 tgattgtatgctccagcttgtaagtatacaaacgtcccacatgggaattattgggtgcacaaattcccttctcctttaagcatgttataataatacacat 46405077  T
Q  413 ttatcttttaatgcaatgtctaggatatatgtg 445  Q
    |||||||||||||||||||||||||||||||||    
T  46405078 ttatcttttaatgcaatgtctaggatatatgtg 46405110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 33538241 - 33538179
Alignment:
Q  177 gtttgattaaaatggctaggcatgtatattattattcttttctcttggcccttctaaagatgc 239  Q
    |||||||||| ||||||||||||||| |||||||||||||||| || |||||| |||||||||    
T  33538241 gtttgattaagatggctaggcatgtagattattattcttttctgtttgcccttttaaagatgc 33538179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 113 - 288
Target Start/End: Original strand, 23972356 - 23972532
Alignment:
Q  113 catccaaatttcatttattttctggttgctatagtgctaggctggctgtcttcaatatttaat-tgtttgattaaaatggctaggcatgtatattattat 211  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||  ||   ||  | ||||||||||||||||||||||||||||||||||    
T  23972356 catcctaatttgatttattttctggttgctatagtgctaggctggctgtcttcgttaaccaaactatttgattaaaatggctaggcatgtatattattat 23972455  T
Q  212 tcttttctcttggcccttctaaagatgcaaatttctttgtgaacacagcacaataattattagcatgtaatcagaaa 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  23972456 tcttttctcttggcccttctaaagatgcaaatttctttgtgaacacaacacaataattagtagcatgtaatcagaaa 23972532  T

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