View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_20 (Length: 402)
Name: NF6019_high_20
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 7864182 - 7863794
Alignment:
| Q |
14 |
agggccattgacaagatttcagcaggaagaacaaccattgtcattgctcacaggatagcaacagtgaagaatgctgattccatagtagttcttgaacatg |
113 |
Q |
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| T |
7864182 |
agggccattgacaagatttcagcaggaagaacaaccattgtcattgctcacaggatagcaacagtgaagaatgctgattccattgtagttcttgaacatg |
7864083 |
T |
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| Q |
114 |
gttctgtcaccgagattggcgaccatcgccagcttatgtcgaaagccggaacctacttcaaccttgtcaaacttgcaactgaatccatttcaaaacctct |
213 |
Q |
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| T |
7864082 |
gttctgtcaccgagattggcgaccatcgccagcttatgtcgaaagctggaacctacttcaaccttgtcaaacttgcaactgaatccatttcaaaacctct |
7863983 |
T |
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| Q |
214 |
tcctacagaaaataacatgcaaaaaaccaaagatttatcatccatcaataataaatatgctcctgatatagcaaagtcaagttatctagtcgatatctcg |
313 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7863982 |
tcctacagaaaataacatgcaaataaccaaagatttatcatccatcaataataaatatgctcctgatatagcaaagtcaagttatctagtcgatatctcg |
7863883 |
T |
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| Q |
314 |
cgctctaaattggaagattcaatgcaggatgagaatcaagaagatattgaagataaaaaatataaaaagtcaagaaattacaaactttc |
402 |
Q |
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| T |
7863882 |
cgctctaaattggaagattcaatgcaggatgagaatcaagaagatattgaagataaaaaatataaaaagtcaagaaattacaaactttc |
7863794 |
T |
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