View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_21 (Length: 401)
Name: NF6019_high_21
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 37457912 - 37458287
Alignment:
| Q |
18 |
ctctctgcatcatatgggtagaacttaaaagaatcaattctactgttttttacacaagtagcttgaaaaatattgtgaaataactttgatctttagtaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37457912 |
ctctctgcatcatatgggtagaacttaaaagaatcaattctactgttttttacacaagtagcttgaaaaatattgtgaaataactttgatctttagtaaa |
37458011 |
T |
|
| Q |
118 |
gcaaggatctttctttcctattcaacctccaaaagctattatctaggaaatggtatacatcagctaaacttataaatgggaaaaggttgaaattaatcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37458012 |
gcaaggatctttctttcctattcaacctccaaaagctattatctaggaaatggtatacatcagctaaacttataaatgggaaaaggttgaaattaatcaa |
37458111 |
T |
|
| Q |
218 |
agtagacgacaaaacgttgtctatgagaaaaggtatagacaagaagggttttagtgacttacaatagttagaaaggggaagttcagctgcggaacagttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37458112 |
agtagacgacaaaacgttgtctatgagaaaaggtatagacaagaagggttttagtgacttacaatagttagaaaggggaagttcagctgcggaacagttc |
37458211 |
T |
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| Q |
318 |
aaccgtagaagaatgtcttagtcatacgtagaggggttcaatgtggacgcaaagaaactcaatacaccagaataat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37458212 |
aaccgtagaagaatgtcttagtcatacgtagaggggttcaatgtggacgcaaagtaactcaatacaccagaataat |
37458287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 99 - 335
Target Start/End: Complemental strand, 8570859 - 8570610
Alignment:
| Q |
99 |
aactttgatctttagtaaagcaaggatctttctttcctattcaacctccaaaagctattatctaggaaatggtatacatcagctaaacttataaa-tggg |
197 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||| | |||| |||||||| ||| |||||||| |||||| ||| |
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| T |
8570859 |
aactttgatctttagtaa-gcaagaatctttctttcccattcaacctccaacagctataaactagcaaatggtacacactagctaaacctataaactggc |
8570761 |
T |
|
| Q |
198 |
aa-------------aaggttgaaattaatcaaagtagacgacaaaacgttgtctatgagaaaaggtatagacaagaagggttttagtgacttacaatag |
284 |
Q |
| |
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|| |||||| ||||||||||||||| |||||||| |||| | |||||||||||||||| |||||| ||||||||| |||||| ||||| |
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| T |
8570760 |
aataaacaaactagcaaggtttaaattaatcaaagtaaacgacaaagcgttttatatgagaaaaggtataaacaagacgggttttagagacttaaaatag |
8570661 |
T |
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| Q |
285 |
ttagaaaggggaagttcagctgcggaacagttcaaccgtagaagaatgtct |
335 |
Q |
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| T |
8570660 |
tgagaaaagggaagctcaactgcgaaacagttcaatagtagaagaacgtct |
8570610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 11989949 - 11989838
Alignment:
| Q |
274 |
acttacaatagttagaaaggggaagttcagctgcggaacagttcaaccgtagaagaatgtcttagtcatacgtagaggggttcaatgtggacgcaaagaa |
373 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||| |||| |||| || | |||||| ||||||||||||| || | |
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| T |
11989949 |
acttacaatagtgagaaaagggaagttcagctgcagaacagttcaatggtagaagaacgtctcagtctgactaaaaggggtacaatgtggacgcagagga |
11989850 |
T |
|
| Q |
374 |
actcaatacacc |
385 |
Q |
| |
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| |||||||||| |
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|
| T |
11989849 |
attcaatacacc |
11989838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 9279918 - 9279954
Alignment:
| Q |
207 |
aaattaatcaaagtagacgacaaaacgttgtctatga |
243 |
Q |
| |
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||||||||| |||||||||||||||| |||||||||| |
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| T |
9279918 |
aaattaatcgaagtagacgacaaaactttgtctatga |
9279954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 328
Target Start/End: Complemental strand, 29455650 - 29455529
Alignment:
| Q |
207 |
aaattaatcaaagtagacgacaaaacgttgtctatgagaaaaggtatagacaagaagggttttagtgacttacaatagttagaaaggggaagttcagctg |
306 |
Q |
| |
|
||||||||||||||||| ||||| || || | |||||||||||||||| ||||||||| |||||| ||||| ||||| | ||||| || ||||||||||| |
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|
| T |
29455650 |
aaattaatcaaagtagaggacaacacattttttatgagaaaaggtataaacaagaaggattttagagacttgcaatattgagaaaaggaaagttcagctg |
29455551 |
T |
|
| Q |
307 |
cggaacagttcaaccgtagaag |
328 |
Q |
| |
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| ||||||||||| ||||||| |
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| T |
29455550 |
tgtaacagttcaacagtagaag |
29455529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 23247409 - 23247455
Alignment:
| Q |
64 |
tttttacacaagtagcttgaaaaatattgtgaaataactttgatctt |
110 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23247409 |
ttttgacataagtagcttgaaaaatattgtgaaataactttgatctt |
23247455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 29455752 - 29455680
Alignment:
| Q |
119 |
caaggatctttctttcctattcaacctccaaaagctattatctaggaaatggtatacatcagctaaacttata |
191 |
Q |
| |
|
|||| ||||| |||||| ||||||||| |||||||||| | |||| ||||||||||||||| ||||| |||| |
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|
| T |
29455752 |
caagtatcttcctttcccattcaaccttcaaaagctataaactagcaaatggtatacatcaattaaacatata |
29455680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 18748395 - 18748349
Alignment:
| Q |
64 |
tttttacacaagtagcttgaaaaatattgtgaaataactttgatctt |
110 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18748395 |
ttttgacacaagtagcttgaaaaatattgtgaaataactttgatctt |
18748349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 24252247 - 24252293
Alignment:
| Q |
64 |
tttttacacaagtagcttgaaaaatattgtgaaataactttgatctt |
110 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
24252247 |
ttttgacacaaatagcttgaaaaatattgtgaaataactttgatctt |
24252293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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