View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_23 (Length: 393)
Name: NF6019_high_23
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_23 |
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| [»] scaffold0959 (1 HSPs) |
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| [»] scaffold0753 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 382
Target Start/End: Original strand, 20330397 - 20330764
Alignment:
| Q |
15 |
acatccacatcgtaaattgcttacattttcataccccttccccattattattttactggccttgaaaaaatttgtcataaaataaacatatcataagaat |
114 |
Q |
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| T |
20330397 |
acatccacatcgtaaattgcttacattttcataccc-ttccccattattattttactggccttaaaaaaatttgtcataaaataaacatatcataagaat |
20330495 |
T |
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| Q |
115 |
tgaatattatttagataacctttcaccaacacgttgaactcgtgttgttttcaatgtactccaattataatttgactgaatatcnnnnnnnngtttaaga |
214 |
Q |
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|||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20330496 |
tgaagattatttatataacctttcaccaacacgttgaattcgtgttgttttcaatgtactccaattataatttgactgaatatc--ttttttgtttaaga |
20330593 |
T |
|
| Q |
215 |
agagagtaagatagcgattaattttcaacttaactataacaattattattatagc---tagtggggatggaaaacttgtttgatatgcctagattgcatg |
311 |
Q |
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| T |
20330594 |
agagagtaagataacgattaattttcaacttaactataacaattattattatagctaatagtggggatggaaaacttgtttgatatgcctaaattgcatg |
20330693 |
T |
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| Q |
312 |
ctactttgatacctcaaaatttacaagataaggagacactctaaataaaactatttgctgccttatttcat |
382 |
Q |
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| T |
20330694 |
ctactttgatacctcaaaatttacaagataaggagacactctaaacaaaactatttgctgcgttatttcat |
20330764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 12386325 - 12386389
Alignment:
| Q |
318 |
tgatacctcaaaatttacaagataaggagacactctaaataaaactatttgctgccttatttcat |
382 |
Q |
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| T |
12386325 |
tgatacctccaaatatacaagataaggagacactataactaaaattatttgctgccatatttcat |
12386389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 1905295 - 1905242
Alignment:
| Q |
329 |
aatttacaagataaggagacactctaaataaaactatttgctgccttatttcat |
382 |
Q |
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| T |
1905295 |
aatttacgagataaggagacactataaatcaaactatttaatgccttatttcat |
1905242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0959 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0959
Description:
Target: scaffold0959; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 3313 - 3377
Alignment:
| Q |
318 |
tgatacctcaaaatttacaagataaggagacactctaaataaaactatttgctgccttatttcat |
382 |
Q |
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| T |
3313 |
tgatacctccaaatttacgagacaacgagatcctataaataaaactctttgctgccttatttcat |
3377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 445 - 381
Alignment:
| Q |
318 |
tgatacctcaaaatttacaagataaggagacactctaaataaaactatttgctgccttatttcat |
382 |
Q |
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||||||| | |||||||| ||||||||||| || || |||||||| |||||||||||||||||| |
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| T |
445 |
tgataccaccaaatttacgagataaggagatcctatagataaaactctttgctgccttatttcat |
381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 15463585 - 15463649
Alignment:
| Q |
319 |
gatacctcaaaatttacaagataaggagaca-ctctaaataaaactatttgctgccttatttcat |
382 |
Q |
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| T |
15463585 |
gataccttaaaatttacaagataagaagacatctataaataaaattatttgctgatttatttcat |
15463649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 15479411 - 15479475
Alignment:
| Q |
319 |
gatacctcaaaatttacaagataaggagaca-ctctaaataaaactatttgctgccttatttcat |
382 |
Q |
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||||||| |||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||| |
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| T |
15479411 |
gataccttcaaatttacaagataagaagacatctataaataaaattatttgctgctttatttcat |
15479475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 15490639 - 15490703
Alignment:
| Q |
319 |
gatacctcaaaatttacaagataaggagaca-ctctaaataaaactatttgctgccttatttcat |
382 |
Q |
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||||||| |||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||| |
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| T |
15490639 |
gataccttcaaatttacaagataagaagacatctataaataaaattatttgctgctttatttcat |
15490703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 9245735 - 9245779
Alignment:
| Q |
338 |
gataaggagacactctaaataaaactatttgctgccttatttcat |
382 |
Q |
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|||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
9245735 |
gataaggagatcctataaataaaactctttgctgccttatttcat |
9245779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 9276067 - 9276131
Alignment:
| Q |
318 |
tgatacctcaaaatttacaagataaggagacactctaaataaaactatttgctgccttatttcat |
382 |
Q |
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||||| |||||||||||| ||| ||||||| || ||||||||||| |||||| ||| ||||||| |
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| T |
9276067 |
tgatatctcaaaatttacgagacaaggagatcctataaataaaactctttgcttcctgatttcat |
9276131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 15435174 - 15435238
Alignment:
| Q |
319 |
gatacctcaaaatttacaagataaggagaca-ctctaaataaaactatttgctgccttatttcat |
382 |
Q |
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||||||| |||||||||||||||| ||||| || ||||||||| |||||||| | ||||||||| |
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| T |
15435174 |
gataccttcaaatttacaagataagaagacatctataaataaaattatttgcttctttatttcat |
15435238 |
T |
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