View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_25 (Length: 379)
Name: NF6019_high_25
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 6967619 - 6967250
Alignment:
| Q |
1 |
tcttctactttgtactactttgtttctttgtttaaactctattggtcttgtgtatacatataggctaggaacatttgtttctcatgtgtttgttacgtat |
100 |
Q |
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| T |
6967619 |
tcttctactttgtactactttgtttctttgtttaaactctattggtcttgtgtatacatataggctaggaacatttgtttctcatgtgtttgttacgtat |
6967520 |
T |
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| Q |
101 |
aaggacaaaatatgattatgagatgttgatagttgatcttgattcttgaatcagaattgcatgtctttttcatagtacactgtttcagaaacaggttgga |
200 |
Q |
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| T |
6967519 |
aaggacaaaatatgatcatgagatgttgatagttgatcttgattcttgaatcagacttgcatgtctttttcatagtacactgttccagaaacaggttgga |
6967420 |
T |
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| Q |
201 |
cttttgaccacatgcaaaagacaacatagccacagttgcttgcttgtcacactacttgtattgtcatgtaatgtggtgaccatgagtttagttaagtttg |
300 |
Q |
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| T |
6967419 |
cttttgaccacatgcaaaagacaacatagccacagttgcttgcttgtcacactacttgtattgtcatgtaatgtggtgaccatgagtttagttaagtttg |
6967320 |
T |
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| Q |
301 |
tagaattcatttaaactgaattagaacaaattaatgactattt-cataaattatagtgcccaaatctgtg |
369 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6967319 |
tagaattcatttaaactgatttagaacaaattaatgactatttccataaattatagtgcccaaatctgtg |
6967250 |
T |
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