View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6019_high_26 (Length: 374)

Name: NF6019_high_26
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6019_high_26
NF6019_high_26
[»] chr7 (4 HSPs)
chr7 (1-356)||(31771320-31771675)
chr7 (267-309)||(425964-426006)
chr7 (309-354)||(28340476-28340522)
chr7 (309-354)||(45593799-45593845)
[»] chr4 (2 HSPs)
chr4 (270-321)||(43824189-43824240)
chr4 (267-321)||(39178364-39178420)
[»] chr1 (2 HSPs)
chr1 (267-354)||(33527227-33527316)
chr1 (281-321)||(40201038-40201078)
[»] chr8 (2 HSPs)
chr8 (269-308)||(2840246-2840285)
chr8 (269-308)||(2844933-2844972)
[»] chr2 (1 HSPs)
chr2 (286-355)||(44439439-44439509)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 31771320 - 31771675
Alignment:
Q  1 gaggagattctttaaggttgatcacggtgatagagatggttctggtaattcttcttcatcctctgatgaagattatgataataatcaagttgcacaagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771320 gaggagattctttaaggttgatcacggtgatagagatggttctggtaattcttcttcatcctctgatgaagattatgataataatcaagttgcacaagta 31771419  T
Q  101 agcgacgacaatgatgataatgatagtgatggtgaagttagctctgcatcttctggttcgttcattcgctttgttttttctcgaaaaagtttttatattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771420 agcgacgacaatgatgataatgatagtgatggtgaagttagctctgcatcttctggttcgttcattcgctttgttttttctcgaaaaagtttttatattg 31771519  T
Q  201 atgagtaatggattattagctctgataagttgcatgacattctcaattttcattaaggcattgtcaggataaacaacttattttgcagcttttagcataa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  31771520 atgagtaatggattattagctctgataagttgcatgacattctcaattttcattaaggcattgtctagataaacaacttattttgcagcttttagcataa 31771619  T
Q  301 gagcttattataagctatttcgtcaaaaaacataaaataaagtcaaactgtttttt 356  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31771620 gagcttattataatctatttcgtcaaaaaacataaaataaagtcaaactgtttttt 31771675  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 426006 - 425964
Alignment:
Q  267 ggataaacaacttattttgcagcttttagcataagagcttatt 309  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||    
T  426006 ggataaataacttattttgcagcttatagcataagcgcttatt 425964  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 28340522 - 28340476
Alignment:
Q  309 tataagctatttcgtcaaaaaaca-taaaataaagtcaaactgtttt 354  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  28340522 tataagctatttcttcaacaaacaataaaataaagtcaaactgtttt 28340476  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 45593845 - 45593799
Alignment:
Q  309 tataagctatttc-gtcaaaaaacataaaataaagtcaaactgtttt 354  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||    
T  45593845 tataagctatttctgtaacaaaacataaaataaagtcaaactgtttt 45593799  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 43824189 - 43824240
Alignment:
Q  270 taaacaacttattttgcagcttttagcataagagcttattataagctatttc 321  Q
    ||||||||||| |||||||||| ||||||||  |||||||||||||||||||    
T  43824189 taaacaacttaatttgcagcttatagcataaccgcttattataagctatttc 43824240  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 39178420 - 39178364
Alignment:
Q  267 ggataaacaacttattttgcagcttttagcataagagcttat--tataagctatttc 321  Q
    |||||||||||||||||| |||||| ||| ||||| ||||||  |||||||||||||    
T  39178420 ggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttc 39178364  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 33527316 - 33527227
Alignment:
Q  267 ggataaacaacttattttgcagcttttagcataagagcttat-tataagctatttcgtcaa-aaaacataaaataaagtcaaactgtttt 354  Q
    ||||||||| |||||||||||||||  |||||||| ||||||  ||||||||||||   || |||| |||||||| ||||||||||||||    
T  33527316 ggataaacagcttattttgcagcttagagcataagcgcttatgaataagctatttctaaaacaaaagataaaatacagtcaaactgtttt 33527227  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 40201078 - 40201038
Alignment:
Q  281 ttttgcagcttttagcataagagcttattataagctatttc 321  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  40201078 ttttgcagcttttagaataagcgcttattataagctatttc 40201038  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 2840246 - 2840285
Alignment:
Q  269 ataaacaacttattttgcagcttttagcataagagcttat 308  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  2840246 ataaacaacttattttgcagcttatagcataagtgcttat 2840285  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 2844933 - 2844972
Alignment:
Q  269 ataaacaacttattttgcagcttttagcataagagcttat 308  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  2844933 ataaacaacttattttgcagcttatagcataagtgcttat 2844972  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 44439509 - 44439439
Alignment:
Q  286 cagcttttagcataagagcttattataagctattt-cgtcaaaaaacataaaataaagtcaaactgttttt 355  Q
    |||||||||||||||| || ||||||||| ||||| | | | |||| |||||||||||| |||||||||||    
T  44439509 cagcttttagcataagcgcatattataagttatttccataacaaaatataaaataaagttaaactgttttt 44439439  T

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