View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_27 (Length: 361)
Name: NF6019_high_27
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 1079074 - 1078743
Alignment:
| Q |
19 |
aagttgctcaatgaatttagcgtgcatttaattataccgcggcgaaaattgattttggttgaaaatgagtaatttacattttgatacatttacaaaagtg |
118 |
Q |
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| T |
1079074 |
aagttgctcaatgaatttagcgtgtatttaattataccgcggcgaaaattgattttggttgaaaatgagtaatttacattttgatacatttacaaaagtg |
1078975 |
T |
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| Q |
119 |
gttttatcaatttatatttagatagtttgaatcacaattggttttataatatataattgccacttttagaatgtgtttggatccacattaagtccattat |
218 |
Q |
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| T |
1078974 |
gttttatcaatttatgtttagatagtttgaatcacaattggttttataatatatgattaccacttatagtatgtgtttgaatccacattaagtccattat |
1078875 |
T |
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| Q |
219 |
tctcgcttccaaagcattctcaccatgatttttgctaaatccaaacacacacctcataagctagaaattttacattttaagtagaattgcttttccaacc |
318 |
Q |
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| T |
1078874 |
tctcgcttccaaagcattctcaccatgatttttgctaaatccaaacacacacctcataagctagaaattttacattttaagtagaattgcttttccaact |
1078775 |
T |
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| Q |
319 |
agaatgagccaatcactataaatttgtgttca |
350 |
Q |
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| T |
1078774 |
agaatgagccaatcactataaatttgtgttca |
1078743 |
T |
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