View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_32 (Length: 306)
Name: NF6019_high_32
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 36327320 - 36327030
Alignment:
| Q |
1 |
caaaagtgctgccttaccctcatacttccaaagaggcctttgaacagaacatgcgcatgcccatgggacctgaatgtaaccctacaactgcaactggact |
100 |
Q |
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| T |
36327320 |
caaaagtgctgccttaccctcatacttccaaagaggcctttgaacagaacatgcgcatgcccatgggacctgaatgtaaccctacaactgcaactggact |
36327221 |
T |
|
| Q |
101 |
tcttaatcagcctgaagtaagtttcactaaacaatt-ctcttgttaacttgagattcttcatttttcctttgttaagtatcatgttagtgccnnnnnnnc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
36327220 |
tcttaatcagcctgaagtaagtttcactaaacaattcctcttgttaacttgaaattcttcatttttcctttgttaagtatcatgttagtgcctttttttc |
36327121 |
T |
|
| Q |
200 |
aaagtaattaagaataatatatggactagctttctttttgagtgagaaaagcccttaattagatactattaatggattttagagggttcta |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36327120 |
aaagtaattaagaataatatatggactagctttctttttgagtgagaaaagcccttaattggatactattaatggattttagagggttcta |
36327030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 44365359 - 44365257
Alignment:
| Q |
22 |
atacttccaaagaggcctttgaacagaacatgcgcatgcccatgggacctgaatgtaaccctacaactgcaactggacttcttaatcagcctgaagtaag |
121 |
Q |
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||||||||||||| | |||| | |||| ||||| |||||||| |||||||||| |||||| ||||| || ||||| ||||| || |||||||||||| |
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| T |
44365359 |
atacttccaaagatgtctttcatcagagtatgcgtatgcccattggacctgaatctaacccgtcaactacatttggacctcttactcggcctgaagtaag |
44365260 |
T |
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| Q |
122 |
ttt |
124 |
Q |
| |
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||| |
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| T |
44365259 |
ttt |
44365257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 52925298 - 52925226
Alignment:
| Q |
10 |
tgccttaccctcatacttccaaagaggcctttgaacagaacatgcgcatgcccatgggacctgaatgtaaccc |
82 |
Q |
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||||||| ||| ||||||||||||| | |||| | |||| |||||||||||||| |||||||||| |||||| |
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| T |
52925298 |
tgccttatccttatacttccaaagatgtctttcatcagagtatgcgcatgcccattggacctgaatctaaccc |
52925226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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