View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_34 (Length: 293)
Name: NF6019_high_34
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 6967975 - 6967712
Alignment:
| Q |
18 |
caaacaaacttaaccccttcaaactcatcataaaacttttgtctttcatccatctttagaactaaagactttctcacatattcaccttggagtttctttg |
117 |
Q |
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| T |
6967975 |
caaacaaacttaaccccttcaaactcatcataaaacttttgtctttcatccatctttagaactaaagactttctcacatattcaccttggagtttctttg |
6967876 |
T |
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| Q |
118 |
cttggttggttgatttagatgttaagtagttttcaatgtataagaaagcttcattggttctcatataatcaccaatgttctcaaagaatctaacctcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967875 |
cttggttggttgatttagatgttaagtagttttcaatgtataagaaagcttcattggttctcatataatcaccaatgttctcaaagaatctaacctcaac |
6967776 |
T |
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| Q |
218 |
aaaagggtaacaaaagttggctaatttctctgagaatttctcaatgagtgcatgaacttgatga |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967775 |
aaaagggtaacaaaagttggctaatttctctgagaatttctcaatgagtgcatgaacttgatga |
6967712 |
T |
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