View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_44 (Length: 266)
Name: NF6019_high_44
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_44 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 2652 - 2910
Alignment:
| Q |
1 |
atgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtgcgtgcagtttgcgtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2652 |
atgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtgcgtgcagtttgcgtttt |
2751 |
T |
|
| Q |
101 |
ggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggtttttctgcctacaagcttgatgtcatgcgctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2752 |
ggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggtttttctgcctacaagcttgatgtcatgcgctg |
2851 |
T |
|
| Q |
201 |
tgggagtttttgttgtagttttgtgaggtttctggtaaattttgtattgtccctatgct |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2852 |
tgggagtttttgttgtagttttgtgaggtttctggtaaattttgtattgtccctgtgct |
2910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 47644636 - 47644394
Alignment:
| Q |
5 |
tgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtgcgtgcagtttgcgttttggtg |
104 |
Q |
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||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
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| T |
47644636 |
tgttggagccctagggagtgtctgattcgttaagggagaggtttcggaagatcggaggttgaggctggggtatgcggtgcatgcagtttcagatttggtg |
47644537 |
T |
|
| Q |
105 |
tactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcag--------ttttctggttttt-ctgcctacaagcttgatgtcatg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||| ||||||| |
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| T |
47644536 |
tactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagtttttttgttttctggtttttgcttcctacacgcttgctgtcatg |
47644437 |
T |
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| Q |
196 |
cgctgtgggag--tttttgttgtagttttgtgaggtttctggta |
237 |
Q |
| |
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||||| ||||| ||||||||| | |||||||||||||||||| |
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| T |
47644436 |
cgctgagggagcttttttgttgctg-tttgtgaggtttctggta |
47644394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 5038146 - 5038356
Alignment:
| Q |
8 |
tggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtgcgtgcagtttgcgttttggtgtac |
107 |
Q |
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|||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| |
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| T |
5038146 |
tggagccctagggagtgtctgattcgttaagggagccatttcggaagatcggaggttgaggctggggtatgcggtgtgtgcagtgtgcggtttggtgtac |
5038245 |
T |
|
| Q |
108 |
tgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggc------agttttctggttttt-ctgcctacaagcttgatgtcatgcgctg |
200 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |||||| |||| |||||||||||| |
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| T |
5038246 |
tgcagttttgtatatgttagcctcaagtctgctgttctgttagcagtggctgttttcgttttctggtttttgcttcctacaggctttctgtcatgcgctg |
5038345 |
T |
|
| Q |
201 |
tgggagttttt |
211 |
Q |
| |
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|||||| |||| |
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| T |
5038346 |
tgggagctttt |
5038356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 34514961 - 34514821
Alignment:
| Q |
98 |
tttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggttttt-ctgcctacaagcttgatgtcatgc |
196 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||| |||| |||||||| |
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| T |
34514961 |
tttggtgtactgcagttttgtatatgttagcctcaggtctgctgttctgttagcagtttttgttttctggtttttgcttcttacaggctttctgtcatgc |
34514862 |
T |
|
| Q |
197 |
gctgtgggag-tttttgttgtagttttgtgaggtttctggta |
237 |
Q |
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| |||||||| ||||||||| | |||||| ||||||||||| |
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| T |
34514861 |
gttgtgggagctttttgttgctg-tttgtggggtttctggta |
34514821 |
T |
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