View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_47 (Length: 261)
Name: NF6019_high_47
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_47 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 8177785 - 8178027
Alignment:
| Q |
19 |
gaaaggtatagattaataaattaaatatcgtccttttttcttagtttacgatgattttcgttttctatgttgagtcttgtttagcaccgatacttcacat |
118 |
Q |
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| T |
8177785 |
gaaaggtatagattaataaattaaatatcgtccttttttcttagtttacgatgattttcgttttctatgttgagtcttgtttagcactgatatttcacat |
8177884 |
T |
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| Q |
119 |
tgaaggcgtatttggtgtctgacatgttttggtattggacactgacacatgtgataacattcaatttattaccaatgtcactgtcgttgtctgaatgaat |
218 |
Q |
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| T |
8177885 |
tgaaggcgtatttggtgtctgacatgttttggtattggacactgacacatgtgataacattcaatttattaccgatgtcactgtcgttgtctgaatgaat |
8177984 |
T |
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| Q |
219 |
catacaaagttcagcatagtttagcttatcgatgtttatgttt |
261 |
Q |
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| T |
8177985 |
catacaaagttcagcatagtttagcttattgatatttatgttt |
8178027 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 9025683 - 9025613
Alignment:
| Q |
118 |
ttgaaggcgtatttggtgtctgacatgttttggtattggacactgacacatgtgataacattcaatttatt |
188 |
Q |
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| T |
9025683 |
ttgaaggtgtgtttggtgtctgacacgttttggtgttggacactgatacatgtgattacagtcaaattatt |
9025613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 29931717 - 29931765
Alignment:
| Q |
133 |
gtgtctgacatgttttggtattggacactgacacatgtgataacattca |
181 |
Q |
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| T |
29931717 |
gtgtctgacatgtgtcggtgttagacactgacacatgtgattacattca |
29931765 |
T |
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