View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_49 (Length: 258)
Name: NF6019_high_49
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 15733391 - 15733619
Alignment:
| Q |
19 |
ttatcactgaactgaactttgctttctccagttttgtggccgcatctgcgaatccacaaattgcttgtatgaatgtaaaataaagtgccaaaagagcacc |
118 |
Q |
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| T |
15733391 |
ttatcactgaactgaactttgctttctccagttttgtggccgcatctgcgaaaccacaaattgcttgtatgaatgtaaaataaagtgccaaaagagcacc |
15733490 |
T |
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| Q |
119 |
taatgtagaaagtcccacagcccaacttgttaaatagttatgaacaagcgaagctctgaatctcgcacgccaacaacccaaatactcattcgcctcattc |
218 |
Q |
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| T |
15733491 |
taatgtagaaagtcccacagcccaacttgttaaatagttatgaacaagcgaagctctgaatctcgcacgccaacaacccaaatactcattcgcctcattc |
15733590 |
T |
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| Q |
219 |
accacgttgtacaaatatgactcattcat |
247 |
Q |
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| T |
15733591 |
accacgttgtacaaatatgactcattcat |
15733619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 15727434 - 15727600
Alignment:
| Q |
81 |
gcttgtatgaatgtaaaataaagtgccaaaagagcacctaatgtagaaagtcccacagcccaacttgttaaatagttatgaacaagcgaagctctgaatc |
180 |
Q |
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| T |
15727434 |
gcttgtatgaatgtaaaataaagagccaaaagagcacctattgtagaaagtcccacagcccaacttgttaaatagttatgaacaagcgaagctctgaatc |
15727533 |
T |
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| Q |
181 |
tcgcacgccaacaacccaaatactcattcgcctcattcaccacgttgtacaaatatgactcattcat |
247 |
Q |
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| T |
15727534 |
tcgcacgccaacaacccaaatactcattcgcctcattcaccactttgtacaaatatgactcattcat |
15727600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 247
Target Start/End: Original strand, 18056832 - 18057006
Alignment:
| Q |
73 |
cacaaattgcttgtatgaatgtaaaataaagtgccaaaagagcacctaatgtagaaagtcccacagcccaacttgttaaatagttatgaacaagcgaagc |
172 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| ||| || || || ||||||||||||||||| || ||||||||||| || |||| | | | |
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| T |
18056832 |
cacaaattgcttgtatgaatgtaaagtaaagagccaaaaaagccccaaaggttgaaagtcccacagcccagctagttaaatagttgtgcacaattgcaac |
18056931 |
T |
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| Q |
173 |
tctgaatctcgcacgccaacaacccaaatactcattcgcctcattcaccacgttgtacaaatatgactcattcat |
247 |
Q |
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| T |
18056932 |
tctcaatcctgcacgccaagaactcaaataatcatttgcatcattcacaactttgtataaatatgactcattcat |
18057006 |
T |
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