View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6019_high_5 (Length: 680)

Name: NF6019_high_5
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6019_high_5
NF6019_high_5
[»] chr7 (1 HSPs)
chr7 (18-673)||(20550756-20551411)


Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 18 - 673
Target Start/End: Complemental strand, 20551411 - 20550756
Alignment:
Q  18 accatggacaaaaccatctaccaataatattaggcacaattggaggagctacatttaccattttcctgatatgtatttcagtatatatatacaattctaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20551411 accatggacaaaaccatctaccaataatattaggcacaattggaggagctacatttaccattttcctgatatgtatttcagtatatatatacaattctaa 20551312  T
Q  118 aataagatatcgagcctcgcacacaactagtatgtattctttgacatcatgtttatatagttagcacttctttcatgtgctaagggggtactattttttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20551311 aataagatatcgagcctcgcacacaactagtatgtattctttgacatcatgtttatatagttagcacttctttcatgtgctaagggggtactattttttg 20551212  T
Q  218 acttaggggaagaaactgatatgaggaactggggtgcagaaaaagtttttacctacaaagaaatcaaagtagctactagcaattttaaggaaattattgg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20551211 acttaggggaagaaactgatatgaggaactggggtgcagaaaaagtttttacctacaaagaaatcaaagtagctactagcaattttaaggaaattattgg 20551112  T
Q  318 aagaggaggttttggatctgtttaccttggaaagcttccaaatggaaaatcagttgctgtcaaagttcggttcgataaatcccaacttggggttgattcc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20551111 aagaggaggttttggatctgtttaccttggaaagcttccaaatggaaaatcagttgctgtcaaagttcggttcgataaatcccaacttggggttgattcc 20551012  T
Q  418 tttatcaatgaggtttattaactaaattctacttgcatataccattaatgcttatgtaagtatatctgaataagtaaaacaacatgtgatacgtattggc 517  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20551011 tttatcaatgaggtttattaactaaattctactcgcatataccattaatgcttatgtaagtatatctgaataagtaaaacaacatgtgatacgtattggc 20550912  T
Q  518 gtttgagttgaatccttagctacgcctcctgcctcttgaatgaaataacgtttgttggattaatctaacggctaagtgatcaacacttacagccgtctgc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20550911 gtttgagttgaatccttagctacgcctcctgcctcttgaatgaaataacgtttgttggattaatctaacggctaagtgatcaacacttacagccgtctgc 20550812  T
Q  618 tcatgatttcctctaatttttccttttctatcttatgttgctcctagattcatctc 673  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20550811 tcatgatttcctctaatttttccttttctatcttatgttgctcctagattcatctc 20550756  T

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