View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6019_high_54 (Length: 251)
Name: NF6019_high_54
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_54 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1078721 - 1078484
Alignment:
| Q |
1 |
aatgattttaggtggtccaaatgtgaaaacgaacatatattttcaacaaatagttggatttccagactcacgaggaatcatcgtaattttatcaaattca |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
1078721 |
aatgattttaagtggtccaaatgtgaaaacgaacatatattttcaacaaatagttggatttccagactcacgaggaatcatcgtgattttatcaaattta |
1078622 |
T |
|
| Q |
101 |
tagacaattcaaacatacatttggtatatttatttatacacagggttagtttttattagaggttaaaacttgtttggggtttctattccatgaatagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1078621 |
tagacaattcaaacatacatttggtatatttatttgtacacagggttagtttttattagaggttaaaacttgtttggggtttctattccatgaatagaaa |
1078522 |
T |
|
| Q |
201 |
atgtttgattagtctcatgcgccgtacccatcctacct |
238 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1078521 |
atgtttcattagtctcatgcgccgtacccatcctacct |
1078484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University