View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6019_high_57 (Length: 247)
Name: NF6019_high_57
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_57 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 44967301 - 44967080
Alignment:
| Q |
12 |
atgaataataaacttacaataaaaataaaagtcttataacatgatatgatatgaaaaactcttcaaattgctagtgaacacttgaagacatcaaacatag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44967301 |
atgaataataaacttacaataaaaataaaagtcttataacatgatatgatatgaaaaactcttcaaattgctagtgaacacttgaagacatcaaacatag |
44967202 |
T |
|
| Q |
112 |
tcaaacttacaagtgatgatcaccaatgtgcctcaaatacctcttcataatccatgtgtcacactaatagaccattaatttaaccatcgatcataatatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44967201 |
tcaaacttacaagtgatgatcaccaatgtgcctcaaatacctctccataatccatgtgtcacactaatagaccattaatttaaccatcgatcataatatc |
44967102 |
T |
|
| Q |
212 |
tcaattaacccctgaatatact |
233 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
44967101 |
tcaattaacctctgaatatact |
44967080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University