View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_high_62 (Length: 242)
Name: NF6019_high_62
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_high_62 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2655487 - 2655246
Alignment:
| Q |
1 |
caacaaaaggtgctgacattgtttctgaatttgtcaatagagaaattaaggattctagtctagcatgctcacctgttcatttgcatggcaatctcaagat |
100 |
Q |
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| T |
2655487 |
caacaaaaggtgctgacattgtttctgaatttgtcaatagagaaattaaggattctggtctagcatgctcacatgttcatttgcatggcaatctcaagat |
2655388 |
T |
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| Q |
101 |
gaaaaacaaacaaggacttccttattttgagtttaaggtaaattcccctgaagatgtctttgttgcaaagacatggagagtaggtaatgctttaaattgg |
200 |
Q |
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| T |
2655387 |
gaaaaacaaacaaggacttccttattttgagtttaaggtaaattcccctgaagatgtctttgttgcaaagacatggagagtaggtaatgctttaaattgg |
2655288 |
T |
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| Q |
201 |
gtatatacctttcactcttttgatactagaacgaagaataat |
242 |
Q |
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| T |
2655287 |
gtatatacctttcactcttttcatactagaacgaagagtaat |
2655246 |
T |
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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 40964835 - 40965036
Alignment:
| Q |
13 |
ctgacattgtttctgaatttgtcaatagagaaattaaggattctagtctagcatgctcacctgttcatttgcatggcaatctcaagatgaaaaacaaaca |
112 |
Q |
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| T |
40964835 |
ctgacattatttctgagtttatcaacagagaaatcaagtattcaggtatagcatcgtcgccggttcacctgcacggtaatctcaagttcgaaaacaaaaa |
40964934 |
T |
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| Q |
113 |
aggacttccttattttgagtttaaggtaaattcccctgaagatgtctttgttgcaaagacatggagagtaggtaatgctttaaattgggtatataccttt |
212 |
Q |
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| T |
40964935 |
tggaatgcctttttttgagttcaaggtgaagtgtcctgaagatgtgtttgtggccaagacatggagagtaggtaacggtttcaattgggtatatacattt |
40965034 |
T |
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| Q |
213 |
ca |
214 |
Q |
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| T |
40965035 |
ca |
40965036 |
T |
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