View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6019_high_7 (Length: 615)

Name: NF6019_high_7
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6019_high_7
NF6019_high_7
[»] chr6 (3 HSPs)
chr6 (20-163)||(17993444-17993587)
chr6 (23-122)||(4460273-4460372)
chr6 (287-369)||(31652228-31652310)
[»] chr4 (2 HSPs)
chr4 (23-159)||(53791155-53791291)
chr4 (19-119)||(44769890-44769990)
[»] chr7 (4 HSPs)
chr7 (157-253)||(6433729-6433828)
chr7 (511-577)||(6433983-6434049)
chr7 (24-103)||(15568864-15568943)
chr7 (373-428)||(6433845-6433900)
[»] chr3 (2 HSPs)
chr3 (23-157)||(22489731-22489865)
chr3 (78-110)||(19884717-19884749)
[»] chr2 (1 HSPs)
chr2 (23-159)||(7395555-7395691)
[»] chr1 (1 HSPs)
chr1 (23-159)||(45529506-45529642)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 17993444 - 17993587
Alignment:
Q  20 agtacctgtttggtacggcggtgtattagcattttccgcgtcccaaggcattttgaatgtgaaaataaagaagctatcttttgtagcttttgtgcaaacg 119  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  17993444 agtacctgtttggtacagcgatgtattagcattttccgcgtcccaaggcgttttgaacgtgaaaataaagaagctaccttttgaagcttttgtgcaaacg 17993543  T
Q  120 gcgnnnnnnnctacttccaccgctacaacaaacacgtacttaat 163  Q
    |||       ||| ||||||||||||||||||||||| ||||||    
T  17993544 gcgtttttttctatttccaccgctacaacaaacacgttcttaat 17993587  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 4460372 - 4460273
Alignment:
Q  23 acctgtttggtacggcggtgtattagcattttccgcgtcccaaggcattttgaatgtgaaaataaagaagctatcttttgtagcttttgtgcaaacggcg 122  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  4460372 acctgtttggtacagcggtgtagtagcattttccacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacggcg 4460273  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 287 - 369
Target Start/End: Original strand, 31652228 - 31652310
Alignment:
Q  287 ttgaatcagatgggaatattatttggcttatagttgttttggactataaatttgtaggttaggaaagagttatttatgattga 369  Q
    |||||| |||||||||| ||  |||||||| |||||| ||| ||| ||||||||||| ||||| ||||||||| |||||||||    
T  31652228 ttgaataagatgggaatttttgttggcttagagttgtgttgaactttaaatttgtagtttaggtaagagttatctatgattga 31652310  T

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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 53791155 - 53791291
Alignment:
Q  23 acctgtttggtacggcggtgtattagcattttccgcgtcccaaggcattttgaatgtgaaaataaagaagctatcttttgtagcttttgtgcaaacggcg 122  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  53791155 acctgtttggtacagcggtgtattagcattttccacgtcccgaggcattttgaaagtgaaaataaagaagctaccatttgtagcttttgtgcaaacggcg 53791254  T
Q  123 nnnnnnnctacttccaccgctacaacaaacacgtact 159  Q
           ||| ||||||||| ||||||||||||||||    
T  53791255 tttttttctatttccaccgccacaacaaacacgtact 53791291  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 44769990 - 44769890
Alignment:
Q  19 aagtacctgtttggtacggcggtgtattagcattttccgcgtcccaaggcattttgaatgtgaaaataaagaagctatcttttgtagcttttgtgcaaac 118  Q
    |||||||||||||||||  ||||||||||||||||||| ||| || || ||||||||| ||||||||||||||| || |||||||||||||||| |||||    
T  44769990 aagtacctgtttggtacaacggtgtattagcattttccacgttccgagacattttgaacgtgaaaataaagaagttaccttttgtagcttttgtacaaac 44769891  T
Q  119 g 119  Q
    |    
T  44769890 g 44769890  T

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Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 6433729 - 6433828
Alignment:
Q  157 acttaatccttttcaccagt---cttgtgactcagttagctagcaaccgttgagtataggggtaggtactgtgagatttgagtagggttcacgtttcaag 253  Q
    ||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6433729 acttaatccttttcaccagttgacttatgactcagttagctagcaaccgttgagtataggggtaggtactgtgagatttgagtagggttcacgtttcaag 6433828  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 511 - 577
Target Start/End: Original strand, 6433983 - 6434049
Alignment:
Q  511 tgattctgtgtttgagtagctttgtctacaaacatgagtgtctgcttgcacttttattctctttttt 577  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||||    
T  6433983 tgattctgtgtttgattagctttgtctacagacatgagtgtctgcttgcacttatattctttttttt 6434049  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 15568943 - 15568864
Alignment:
Q  24 cctgtttggtacggcggtgtattagcattttccgcgtcccaaggcattttgaatgtgaaaataaagaagctatcttttgt 103  Q
    |||||||||||| | |||||||||| |||||||||||||| |||| ||||||| ||||||||||||||| || |||||||    
T  15568943 cctgtttggtacagtggtgtattagaattttccgcgtcccgaggcgttttgaacgtgaaaataaagaagttaccttttgt 15568864  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 6433845 - 6433900
Alignment:
Q  373 aattggctcagttgttgtttgagtggttgtgtgaaggtgtgatcattttgaaagct 428  Q
    |||||||||| |||| |||||||||||||||||| ||||| |||||||||||||||    
T  6433845 aattggctcaattgtagtttgagtggttgtgtgatggtgtaatcattttgaaagct 6433900  T

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Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 22489865 - 22489731
Alignment:
Q  23 acctgtttggtacggcggtgtattagcattttccgcgtcccaaggcattttgaatgtgaaaataaagaagctatcttttgtagcttttgtgcaaacggcg 122  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||||    
T  22489865 acctgtttggtacagcggtgtattagcattttccgcgtcccgaggcattttgaacatgaaaataaagaagctaccttttctagcttttgtgcaaacggcg 22489766  T
Q  123 nnnnnnnctacttccaccgctacaacaaacacgta 157  Q
           ||| ||||||||| ||||||||||||||    
T  22489765 tttttttctatttccaccgccacaacaaacacgta 22489731  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 19884749 - 19884717
Alignment:
Q  78 gtgaaaataaagaagctatcttttgtagctttt 110  Q
    |||||||||||||||||| ||||||||||||||    
T  19884749 gtgaaaataaagaagctaacttttgtagctttt 19884717  T

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Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 7395555 - 7395691
Alignment:
Q  23 acctgtttggtacggcggtgtattagcattttccgcgtcccaaggcattttgaatgtgaaaataaagaagctatcttttgtagcttttgtgcaaacggcg 122  Q
    ||||||||||||| |||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  7395555 acctgtttggtacagcggtgtattagcattttccgcatcccgaggcattttgaaagtgaaaataaagaagctaccatttgtagcttttgtgcaaacggcg 7395654  T
Q  123 nnnnnnnctacttccaccgctacaacaaacacgtact 159  Q
           ||| |||||||||  |||||||||||||||    
T  7395655 tttttttctatttccaccgccgcaacaaacacgtact 7395691  T

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Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 45529642 - 45529506
Alignment:
Q  23 acctgtttggtacggcggtgtattagcattttccgcgtcccaaggcattttgaatgtgaaaataaagaagctatcttttgtagcttttgtgcaaacggcg 122  Q
    ||||||||||||| |||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||    
T  45529642 acctgtttggtacagcggtgtattagcattttccgcatcccgaggcattttgaaagtgaaaataaagaagctaacatttatagcttttgtgcaaacggcg 45529543  T
Q  123 nnnnnnnctacttccaccgctacaacaaacacgtact 159  Q
           ||| ||||||||| ||||||||||||||||    
T  45529542 tttttttctatttccaccgccacaacaaacacgtact 45529506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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