View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6019_low_10 (Length: 548)

Name: NF6019_low_10
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6019_low_10
NF6019_low_10
[»] chr3 (12 HSPs)
chr3 (226-548)||(32996691-32997015)
chr3 (327-395)||(5354405-5354473)
chr3 (226-277)||(17227946-17227997)
chr3 (225-260)||(38742189-38742224)
chr3 (227-273)||(41755499-41755545)
chr3 (226-275)||(21812600-21812649)
chr3 (226-275)||(45242987-45243036)
chr3 (226-259)||(46721974-46722007)
chr3 (227-275)||(36750437-36750485)
chr3 (227-275)||(37105077-37105125)
chr3 (227-275)||(44686255-44686302)
chr3 (227-275)||(49757182-49757230)
[»] chr2 (7 HSPs)
chr2 (333-548)||(24741523-24741738)
chr2 (227-308)||(24741772-24741853)
chr2 (227-275)||(4479702-4479750)
chr2 (227-275)||(14573261-14573309)
chr2 (227-275)||(14573999-14574047)
chr2 (227-275)||(21471017-21471065)
chr2 (227-275)||(21471954-21472002)
[»] chr6 (13 HSPs)
chr6 (1-213)||(30820467-30820671)
chr6 (459-548)||(24549649-24549742)
chr6 (225-275)||(15083318-15083368)
chr6 (227-275)||(3543063-3543111)
chr6 (226-306)||(33078283-33078363)
chr6 (229-275)||(3542816-3542862)
chr6 (226-308)||(24551566-24551648)
chr6 (327-380)||(24551489-24551541)
chr6 (226-275)||(33480628-33480677)
chr6 (227-275)||(7159341-7159389)
chr6 (227-275)||(7193338-7193386)
chr6 (227-275)||(7532440-7532488)
chr6 (223-275)||(22579931-22579983)
[»] chr8 (8 HSPs)
chr8 (327-410)||(25876629-25876712)
chr8 (227-410)||(7424421-7424610)
chr8 (227-311)||(25876521-25876605)
chr8 (225-277)||(1365827-1365879)
chr8 (227-275)||(34992264-34992312)
chr8 (227-277)||(61454-61504)
chr8 (226-275)||(27918047-27918096)
chr8 (227-275)||(41859310-41859358)
[»] chr4 (14 HSPs)
chr4 (328-410)||(42544596-42544678)
chr4 (227-311)||(42544488-42544572)
chr4 (225-275)||(21165445-21165495)
chr4 (225-275)||(38694954-38695004)
chr4 (226-275)||(25371545-25371594)
chr4 (227-260)||(52757813-52757846)
chr4 (227-275)||(37275088-37275136)
chr4 (232-275)||(3847891-3847934)
chr4 (228-275)||(36864818-36864865)
chr4 (227-277)||(47198605-47198655)
chr4 (227-277)||(55160065-55160114)
chr4 (227-275)||(11417687-11417735)
chr4 (227-275)||(26611283-26611331)
chr4 (227-275)||(29651332-29651380)
[»] chr1 (8 HSPs)
chr1 (226-275)||(49610705-49610754)
chr1 (227-275)||(193850-193898)
chr1 (226-275)||(43737728-43737777)
chr1 (227-275)||(1012547-1012595)
chr1 (227-275)||(16270207-16270255)
chr1 (227-275)||(23440865-23440913)
chr1 (227-275)||(51974437-51974485)
chr1 (227-275)||(51987827-51987875)
[»] scaffold0041 (1 HSPs)
scaffold0041 (225-275)||(27575-27625)
[»] chr5 (6 HSPs)
chr5 (233-275)||(4607470-4607512)
chr5 (227-275)||(8204120-8204168)
chr5 (227-275)||(12190158-12190206)
chr5 (227-275)||(15184017-15184065)
chr5 (332-395)||(31147477-31147538)
chr5 (226-274)||(39950403-39950451)
[»] scaffold0311 (1 HSPs)
scaffold0311 (227-275)||(160-208)
[»] chr7 (8 HSPs)
chr7 (227-275)||(668179-668227)
chr7 (227-275)||(17145622-17145670)
chr7 (227-275)||(37468910-37468958)
chr7 (227-275)||(37469005-37469053)
chr7 (227-275)||(37864307-37864355)
chr7 (227-275)||(38778854-38778902)
chr7 (227-275)||(38779563-38779611)
chr7 (227-275)||(41194513-41194561)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 226 - 548
Target Start/End: Complemental strand, 32997015 - 32996691
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctc-accatgagaaagtctctttaccaaggacacctgtcgattttgaacttgcnnnnnnnnnnnnn 324  Q
    ||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||| ||||| ||||||||||||                 
T  32997015 tggtgccatttaatttgagaaagaagacttttttttccaccatgggaaagtctctttaccaaggacacgtgtcggttttgaacttgcaaaaaaaaaaaaa 32996916  T
Q  325 nn-ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattat 423  Q
       |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32996915 aaactcagtttattattttaatgttatttccaagcttactactgcacctccccatttctccattacaccacaaaactgattgattaaaacatgaaattat 32996816  T
Q  424 attattcttcttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaata 523  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  32996815 attcttcttcttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaactgttcttcttctcgcgtaaaata 32996716  T
Q  524 ctcagtttccaacaaagaaaatcaa 548  Q
    ||||||||||||||||||| |||||    
T  32996715 ctcagtttccaacaaagaacatcaa 32996691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 5354473 - 5354405
Alignment:
Q  327 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccaca 395  Q
    |||||||||||||||||||||||| |  |||||||||  |||||||||| |||| | || |||||||||    
T  5354473 ctcaatttattattttaatgttgtgtttaagcttactgttgcacctccctatttcttcagtacaccaca 5354405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 17227997 - 17227946
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 277  Q
    ||||| ||||||||||||||||| |||||| |||| |||||||| |||||||    
T  17227997 tggtggcatttaatttgggaaaggagacttctttcccaccatgaaaaagtct 17227946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 38742224 - 38742189
Alignment:
Q  225 ttggtgccatttaatttgggaaagaagacttttttc 260  Q
    ||||||||||||||| ||||||||||||||||||||    
T  38742224 ttggtgccatttaatctgggaaagaagacttttttc 38742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 41755499 - 41755545
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaa 273  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||||||||    
T  41755499 ggtgtcatttaatttgggaaaggagagttttttcccaccatgagaaa 41755545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 21812649 - 21812600
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||||| |||||    
T  21812649 tggtgccgtttaatttgggaaaggagacttttttttcatcatgaaaaagt 21812600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 45243036 - 45242987
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||||||||||||||||||||||||| || |||  ||||||| ||||||    
T  45243036 tggtgccatttaatttgggaaagaagagttcttttccaccatgggaaagt 45242987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 46722007 - 46721974
Alignment:
Q  226 tggtgccatttaatttgggaaagaagactttttt 259  Q
    ||||| ||||||||||||||||||||||||||||    
T  46722007 tggtgtcatttaatttgggaaagaagactttttt 46721974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 36750485 - 36750437
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  36750485 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 36750437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 37105125 - 37105077
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||| ||||||||||||||  ||||||||||| ||||||| ||||||    
T  37105125 ggtgccgtttaatttgggaaacgagacttttttcccaccatgggaaagt 37105077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 44686255 - 44686302
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||||||||||||||| |||| ||| |||||| |||||||||||||||    
T  44686255 ggtgccatttaatttggaaaaggagagtttttt-tcaccatgagaaagt 44686302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 49757230 - 49757182
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||| ||||||||||||||| |||||||||||  |||||| ||||||    
T  49757230 ggtgccgtttaatttgggaaaggagacttttttcctaccatgggaaagt 49757182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 4e-92; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 333 - 548
Target Start/End: Complemental strand, 24741738 - 24741523
Alignment:
Q  333 ttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattatattattctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||    
T  24741738 ttattattttaatgttgtttccaagcttactactgcacctccccatttcttcagtacaccacaaaactgattgattaaaacatgaaattatattcttctt 24741639  T
Q  433 cttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaatactcagtttc 532  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||| |||||||||||||    
T  24741638 cttctcacgtacatcaaatatgaaaaaactcacaacataagaatacccaaaaaaggcttaacatcaattgtacttcttctcgcgtacaatactcagtttc 24741539  T
Q  533 caacaaagaaaatcaa 548  Q
    |||||||||| |||||    
T  24741538 caacaaagaacatcaa 24741523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 24741853 - 24741772
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaact 308  Q
    |||||| ||||||||||||||||||||||||||| |||||||  |||  ||||||||||||||||||||||  |||||||||    
T  24741853 ggtgccgtttaatttgggaaagaagacttttttcccaccatggaaaaacctctttaccaaggacacctgtcagttttgaact 24741772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 4479750 - 4479702
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  4479750 ggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagt 4479702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 14573261 - 14573309
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 14573309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 14574047 - 14573999
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| |||||| |||||||    
T  14574047 ggtgccatttaatttgggaaaggagagttctttcccaccataagaaagt 14573999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 21471017 - 21471065
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  21471017 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 21471065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 21472002 - 21471954
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 21471954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 5e-39; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 30820467 - 30820671
Alignment:
Q  1 ttagtgatatgccatgtgttttattgtgggttatggttgtgccaataatcacttatagttgaactccctatagatgccaaaattaaatagttaaaggtaa 100  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||       |||||  ||||||||||||||   |||||  |||    
T  30820467 ttagtgatatgccatgtattttattgtgggtcatggctgtgccaataatcacttgtagt-------cctatccatgccaaaattaaacgtttaaaaataa 30820559  T
Q  101 gtatttcattttagtcgaatcgattaaatttaaattttgcatctcacttgatagcatcatgaaaaatgtacaacatggttggctccattggactatacat 200  Q
       || ||||||||| |||| |||||||||| ||||||| |||||||||| |||||||||||||||| | |||||||||| | |||||||||||||||||    
T  30820560 ag-ttacattttagttgaatggattaaatttgaattttgtatctcacttgttagcatcatgaaaaatctccaacatggtttgttccattggactatacat 30820658  T
Q  201 tggtgggaaacca 213  Q
     ||||||||||||    
T  30820659 aggtgggaaacca 30820671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 459 - 548
Target Start/End: Complemental strand, 24549742 - 24549649
Alignment:
Q  459 aactcacaacataagaatacccagaaaaa----gcttaacatcaattgttcttcttctagcgtaaaatactcagtttccaacaaagaaaatcaa 548  Q
    ||||||||||||||||| |||||||||||    |||||||||||| | |||||||||| |||||   ||||||||||| ||||||||| |||||    
T  24549742 aactcacaacataagaaaacccagaaaaaaaaagcttaacatcaactattcttcttctcgcgtaccctactcagtttcgaacaaagaacatcaa 24549649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 15083368 - 15083318
Alignment:
Q  225 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  15083368 ttggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 15083318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 3543111 - 3543063
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3543063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 33078363 - 33078283
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaa 306  Q
    ||||||| |||||||||| |||  |||||||||| | |||||| || |||| ||||||| ||||||||||||  |||||||    
T  33078363 tggtgccgtttaatttggaaaatgagactttttttttaccatgggacagtccctttacccaggacacctgtcagttttgaa 33078283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 3542816 - 3542862
Alignment:
Q  229 tgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  3542816 tgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 24551648 - 24551566
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaact 308  Q
    ||||||| ||||||||| |||   ||||||||||  ||| |||| |||||  ||||||| |||||| ||||||||||||||||    
T  24551648 tggtgccgtttaatttgagaattgagactttttttccactatgaaaaagtacctttacccaggacatctgtcgattttgaact 24551566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 24551541 - 24551489
Alignment:
Q  327 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccattt 380  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| |||| |||||    
T  24551541 ctcaatttattattttaatgtt-ttttcaagcttactattgcatctcctcattt 24551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 33480677 - 33480628
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  33480677 tggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 33480628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 7159389 - 7159341
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| | ||||||||| || |||| ||||||    
T  7159389 ggtgccatttaatttgggaaagcaaacttttttcccatcatgggaaagt 7159341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 7193338 - 7193386
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  7193338 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 7193386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 7532488 - 7532440
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||| ||||||||||||||||| |||||| ||| |||||||| ||||||    
T  7532488 ggtggcatttaatttgggaaaggagacttctttttcaccatgggaaagt 7532440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 22579931 - 22579983
Alignment:
Q  223 tcttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||||||| ||| || |||  ||||||| ||||||    
T  22579931 tcttggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagt 22579983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 25876629 - 25876712
Alignment:
Q  327 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  25876629 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccacaaaactgattgattaa 25876712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 227 - 410
Target Start/End: Complemental strand, 7424610 - 7424421
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgcnnnnnnnnnnnnnnn 326  Q
    ||||| |||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||| |||| |||||||                   
T  7424610 ggtgcaatttaatttgagaaagaagactttttttccaccatgggaaagtctctttaccaaggacacttgtcggtttttaacttgcaaaaaaaaaaaacaa 7424511  T
Q  327 ------ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 410  Q
          |||||||||||||||||||||| ||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  7424510 aaaaaactcaatttattattttaatgttctttccaaacttactactgcacctccccatttccgcattacaccacaaaactgattgattaa 7424421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 25876521 - 25876605
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgc 311  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||| || ||||| |||| |||||||    
T  25876521 ggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagtctctttacgaaggatacttgtcggtttttaacttgc 25876605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 1365827 - 1365879
Alignment:
Q  225 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 277  Q
    |||||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  1365827 ttggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 1365879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 34992312 - 34992264
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 34992264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 61454 - 61504
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 277  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  61454 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 61504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 27918096 - 27918047
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||| ||||||    
T  27918096 tggtgccgtttaatttgggaaatgagacttttttcccaccatgggaaagt 27918047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 41859310 - 41859358
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  41859310 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 41859358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 42544596 - 42544678
Alignment:
Q  328 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  42544596 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccataaaactgattgattaa 42544678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 42544488 - 42544572
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgc 311  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||||||||||| ||||||||| ||||| |||| |||||||    
T  42544488 ggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagtctctttatcaaggacacttgtcggtttttaacttgc 42544572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 21165445 - 21165495
Alignment:
Q  225 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||||||| | || |||| ||||||||||||||    
T  21165445 ttggtgccatttaatttgggaaagaatagttctttcccaccatgagaaagt 21165495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 38695004 - 38694954
Alignment:
Q  225 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  38695004 ttggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 38694954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 25371594 - 25371545
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  25371594 tggtgacatttaatttgggaaaggagacttctttcccaccatgagaaagt 25371545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 52757813 - 52757846
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttc 260  Q
    ||||||||||||||||||||||||||||||||||    
T  52757813 ggtgccatttaatttgggaaagaagacttttttc 52757846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 37275088 - 37275136
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||| ||||||||||||||| |||||| |||| ||||||||||||||    
T  37275088 ggtgccgtttaatttgggaaaggagacttctttcccaccatgagaaagt 37275136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 3847891 - 3847934
Alignment:
Q  232 catttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatgggaaagt 3847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 36864818 - 36864865
Alignment:
Q  228 gtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||| |||||||||||||||| ||| || |||||||||||||||||||    
T  36864818 gtgctatttaatttgggaaaggagagttctttctcaccatgagaaagt 36864865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 47198605 - 47198655
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 277  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  47198605 ggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagtct 47198655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 55160114 - 55160065
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 277  Q
    |||| ||||||||||||||||| |||| |||||||||||||| ||||||||    
T  55160114 ggtggcatttaatttgggaaaggagac-tttttctcaccatgggaaagtct 55160065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 11417687 - 11417735
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  11417687 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 11417735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 26611331 - 26611283
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  26611331 ggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagt 26611283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 29651380 - 29651332
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  29651380 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 29651332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 49610705 - 49610754
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||||||||| ||||||||||||||||||||||| | ||||| ||||||    
T  49610705 tggtgccattttatttgggaaagaagacttttttccctccatgggaaagt 49610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 193850 - 193898
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 193898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 43737728 - 43737777
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  43737728 tggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagt 43737777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 1012547 - 1012595
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||| ||||||||||||||| ||| ||||||| ||||||| ||||||    
T  1012547 ggtgccgtttaatttgggaaaggagatttttttcccaccatgggaaagt 1012595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 16270207 - 16270255
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 16270255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 23440913 - 23440865
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 23440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 51974437 - 51974485
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  51974437 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 51974485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 51987827 - 51987875
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||    
T  51987827 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 51987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 27625 - 27575
Alignment:
Q  225 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||| ||||||    
T  27625 ttggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagt 27575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 4607470 - 4607512
Alignment:
Q  233 atttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||    
T  4607470 atttaatttgggaaagtagacttttttcccaccatgggaaagt 4607512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 8204120 - 8204168
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  8204120 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 8204168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 12190206 - 12190158
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||  ||| ||||||| ||||||| ||||||    
T  12190206 ggtgccatttaatttgggaaaagagagttttttcccaccatgggaaagt 12190158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 15184065 - 15184017
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 15184017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 395
Target Start/End: Original strand, 31147477 - 31147538
Alignment:
Q  332 tttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccaca 395  Q
    |||||||||||||||||||||  ||||||||| ||||||  |||||||| | ||||||| ||||    
T  31147477 tttattattttaatgttgttttgaagcttactgctgcac--ccccatttcttcattacaacaca 31147538  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 39950403 - 39950451
Alignment:
Q  226 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaag 274  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| |||||    
T  39950403 tggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 208 - 160
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  208 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 160  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 668179 - 668227
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 668227  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 17145622 - 17145670
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 17145670  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 37468910 - 37468958
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  37468910 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 37468958  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 37469053 - 37469005
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 37469005  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 37864355 - 37864307
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    ||||||||||||||||||||| |||| || |||| ||||||| ||||||    
T  37864355 ggtgccatttaatttgggaaataagagttctttcccaccatgggaaagt 37864307  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 38778854 - 38778902
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  38778854 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 38778902  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 38779611 - 38779563
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 38779563  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 41194513 - 41194561
Alignment:
Q  227 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 275  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  41194513 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 41194561  T

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