View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6019_low_14 (Length: 474)

Name: NF6019_low_14
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6019_low_14
NF6019_low_14
[»] chr5 (26 HSPs)
chr5 (200-406)||(30748025-30748232)
chr5 (200-406)||(30340053-30340260)
chr5 (16-201)||(29870834-29871019)
chr5 (16-190)||(30339795-30339969)
chr5 (22-201)||(30481980-30482159)
chr5 (16-200)||(30434471-30434655)
chr5 (46-200)||(30398663-30398817)
chr5 (16-195)||(30748297-30748476)
chr5 (16-190)||(29851958-29852132)
chr5 (16-190)||(30243642-30243816)
chr5 (16-201)||(30058936-30059121)
chr5 (16-156)||(4380357-4380497)
chr5 (46-200)||(17419191-17419345)
chr5 (336-406)||(30481726-30481796)
chr5 (16-201)||(30678510-30678688)
chr5 (63-187)||(30202743-30202867)
chr5 (209-264)||(30058563-30058618)
chr5 (19-188)||(30205102-30205271)
chr5 (16-95)||(30482158-30482237)
chr5 (125-190)||(29710349-29710414)
chr5 (251-308)||(29851761-29851818)
chr5 (84-190)||(30473965-30474071)
chr5 (49-178)||(30429542-30429671)
chr5 (121-189)||(17981534-17981602)
chr5 (372-404)||(29870580-29870612)
chr5 (201-233)||(30481888-30481920)
[»] chr7 (1 HSPs)
chr7 (16-198)||(26705914-26706096)
[»] chr4 (5 HSPs)
chr4 (31-190)||(20298032-20298191)
chr4 (48-190)||(20303931-20304072)
chr4 (16-94)||(20297945-20298023)
chr4 (140-190)||(13615451-13615501)
chr4 (372-404)||(20298402-20298434)
[»] chr1 (1 HSPs)
chr1 (63-190)||(7098005-7098132)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 200 - 406
Target Start/End: Complemental strand, 30748232 - 30748025
Alignment:
Q  200 ttcaattttactggtaagatctctatttccccttatttgcctcaattcactttatttttattcaaaaatatttttatatattctcaatcttgacttcttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748232 ttcaattttactggtaagatctctatttccccttatttgcctcaattcactttatttttattcaaaaatatttttatatattctcaatcttgacttcttt 30748133  T
Q  300 ggaacccatc-ccccagaatgagcaccagaatctttatacatgaaagatatttcactgctcaactaaagttacaaatgttctaattcaggtcattttctt 398  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748132 ggaacccatccccccagaatgagcaccagaatctttatacatgaaagatatttcactgctcaactaaagttacaaatgttctaattcaggtcattttctt 30748033  T
Q  399 catcatag 406  Q
    ||||||||    
T  30748032 catcatag 30748025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 200 - 406
Target Start/End: Original strand, 30340053 - 30340260
Alignment:
Q  200 ttcaattttactggtaagatctctatttccccttatttgcctcaattcactttatttttattcaaaaatatttttatatatt-ctcaatcttgacttctt 298  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  30340053 ttcaattttactggtaagatctctatttccccttatctgcctcaattcactttatttttattcaaaagtatttttatatatttctcaatcttgacttctt 30340152  T
Q  299 tggaacccatcccccagaatgagcaccagaatctttatacatgaaagatatttcactgctcaactaaagttacaaatgttctaattcaggtcattttctt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340153 tggaacccatcccccagaatgagcaccagaatctttatacatgaaagatatttcactgctcaactaaagttacaaatgttctaattcaggtcattttctt 30340252  T
Q  399 catcatag 406  Q
    ||||||||    
T  30340253 catcatag 30340260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 29871019 - 29870834
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattg 115  Q
    |||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  29871019 cttcaatcccttcgaattttaaggatttggaattgtgaaggattgcgatgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattg 29870920  T
Q  116 agggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaacaataaagttt 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  29870919 agggttgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaataatacagttt 29870834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 30339795 - 30339969
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattg 115  Q
    ||||||||||||||||||||| ||||||  |  ||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||      
T  30339795 cttcaatcccttcgaactctacagatttatagctgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgactatca 30339894  T
Q  116 agggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 190  Q
        ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339895 ttaattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 30339969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 30482159 - 30481980
Alignment:
Q  22 tcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggtt 121  Q
    |||||||||| |||| ||||||  |  ||| ||||||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||  ||  |    
T  30482159 tcccttcgaaatctacagatttatagctgtaaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaat 30482060  T
Q  122 gcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaacaataaagttt 201  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  30482059 gcccaacattagaggaacgatgcaaagagggaacatgggaggattgggacaagatagctcatattccaaaaatacagttt 30481980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 30434655 - 30434471
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattg 115  Q
    ||||||||||||||| |||||  |||||||  ||||  |||||||||||||||||||||||||||  ||||||||||||| |||||||||||| | ||      
T  30434655 cttcaatcccttcgagctctactgatttggggttgtagaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgtctatca 30434556  T
Q  116 agggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaacaataaagtt 200  Q
      | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  30434555 ttgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaagaatagagtt 30434471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 30398817 - 30398663
Alignment:
Q  46 aattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgca 145  Q
    |||||| ||| |||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||  | | ||||||||||||| ||||| ||||||    
T  30398817 aattgtaaagaattgcgatgctttccggagggtattagacacctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgca 30398718  T
Q  146 aagagggaacaggggaggattgggacaagatagctcatattccaacaataaagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  30398717 aagagggaacaggggaggattgggacaagatagctcatattccaaaaatacagtt 30398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 30748476 - 30748297
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttct-gaca--a 112  Q
    ||||||||||||||| ||||| ||||||||  ||||  |||||||||||||||||||||||||||  ||||||||||||| ||||||||||| || |  |    
T  30748476 cttcaatcccttcgagctctacagatttggggttgtagaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttgatatca 30748377  T
Q  113 ttgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaacaata 195  Q
    ||||   ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  30748376 ttga---ttgcccaacattagaggaacgatgcaaagagggaacatgggaggattgggacaagatagctcatattccaaaaata 30748297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 29852132 - 29851958
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattg 115  Q
    |||||||||||||||||||||  ||||    ||||| |||||||| |||||||||||||||||||  ||||||||||||| |||||||||||| |||||     
T  29852132 cttcaatcccttcgaactctacggattatatattgtaaaggattgagatgcttgccggagggtattggacacctcacttctcttgagcttctgtcaatta 29852033  T
Q  116 agggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 190  Q
    |   ||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||||| ||||||||||||    
T  29852032 aaaattgcccaacattagaggaacgatgcaaagtgggaacatgtgaggattgggacaagatatctcatattccaa 29851958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 30243642 - 30243816
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattg 115  Q
    |||||||||||||||  ||||||||||   |  ||||||||||||||||||||||||||||||||  ||||||||||||| |||||| || |||  |||     
T  30243642 cttcaatcccttcgatttctaaagattcatagatgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttttgaatattt 30243741  T
Q  116 agggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 190  Q
    |    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30243742 ataaatgtccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 30243816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 30059121 - 30058936
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattg 115  Q
    ||||||||||||||||||||| | ||||  |  ||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||||||||| ||      
T  30059121 cttcaatcccttcgaactctacatatttatagctgtgaaggattgcgatgtttgccggagggtattcgacacctcacttctcttgagcttctgactatca 30059022  T
Q  116 agggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaacaataaagttt 201  Q
      ||||||| ||||||| ||||| |||||||  || |||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  30059021 ttggttgccgaacattaaaggaacgatgcaagaagcgaacaggggaggattgggacaagatatctcatattccaaaaatacagttt 30058936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 4380497 - 4380357
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattg 115  Q
    |||||||||||| | ||||||| ||||||| ||||  ||||||||||||||||||||||||||||  ||||||||||||| |||||| |||||| |||      
T  4380497 cttcaatcccttaggactctaacgatttgggattgcaaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgagaatca 4380398  T
Q  116 agggttgcccaacattagaggaaagatgcaaagagggaaca 156  Q
      ||||||||||||||||||||| |||||||||||||||||    
T  4380397 ttggttgcccaacattagaggaacgatgcaaagagggaaca 4380357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 17419191 - 17419345
Alignment:
Q  46 aattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgca 145  Q
    ||||||||||| ||| |||||||||  ||||||||  ||||||||||||| |  ||| ||||||  ||| | |  | |||||||||||||||| ||||||    
T  17419191 aattgtgaaggtttgagatgcttgctagagggtattcgacacctcacttctcccgagtttctgaacatttatgactccccaacattagaggaacgatgca 17419290  T
Q  146 aagagggaacaggggaggattgggacaagatagctcatattccaacaataaagtt 200  Q
    | |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  17419291 aggagggaaccggggaggattgggacaagatagctcatattccaaaaataaagtt 17419345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 30481796 - 30481726
Alignment:
Q  336 tacatgaaagatatttcactgctcaactaaagttacaaatgttctaattcaggtcattttcttcatcatag 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30481796 tacatgaaagatatttcactgctcaactaaagttacaaatgttctaattcaggtcattttcttcatcatag 30481726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 30678510 - 30678688
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattg 115  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||  |||||||||| || |||||   | |   |||      
T  30678510 cttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttgccggagggtattcgacacctcacatctcttgaatatttataaat-- 30678607  T
Q  116 agggttgcccaacattagag-gaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaacaataaagttt 201  Q
          | |||||||| | | ||| | |||||||||||||  |||||||||||||||||||||||||||||||||| |||| |||||    
T  30678608 ------gtccaacatttgtgagaagggtgcaaagagggaatgggggaggattgggacaagatagctcatattccaaaaatacagttt 30678688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 30202867 - 30202743
Alignment:
Q  63 atgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggag 162  Q
    ||||||||  || ||||| ||||||||||||||||||||  | |||||||||   |||||||||| |||  ||||| ||||||| |||||||||||||||    
T  30202867 atgcttgctagaaggtattagacacctcacttcacttgatttgctgacaattttcggttgcccaatattgaaggaacgatgcaaggagggaacaggggag 30202768  T
Q  163 gattgggacaagatagctcatattc 187  Q
     | |||||||||||||| |||||||    
T  30202767 aactgggacaagatagcacatattc 30202743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 30058618 - 30058563
Alignment:
Q  209 actggtaagatctctatttccccttatttgcctcaattcactttatttttattcaa 264  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30058618 actggtaagatctctatttccccttatctgcctcaattcactttatttttattcaa 30058563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 30205271 - 30205102
Alignment:
Q  19 caatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagg 118  Q
    |||||||| ||||||||| | |||||   |||| ||| | || ||||||| ||||| |||||  |||| |||||||| || |||||||||||||||   |    
T  30205271 caatccctccgaactctagatatttgtcgttgtaaagaactgagatgcttaccggaaggtattcgacatctcacttctctggagcttctgacaattcgtg 30205172  T
Q  119 gttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattcc 188  Q
    |||| |||||| |||| ||  ||||||| ||||||||||| ||||| ||| |||||||| | ||||||||    
T  30205171 gttgtccaacactagaagagcgatgcaaggagggaacaggagaggactggtacaagatatcgcatattcc 30205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 30482237 - 30482158
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttc 95  Q
    ||||||||||||||| ||||| | |||| || ||||  ||||||| |||||||||||||||||||  |||||||||||||    
T  30482237 cttcaatcccttcgagctctacacatttcgagttgtagaggattgagatgcttgccggagggtattcgacacctcacttc 30482158  T

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Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 29710349 - 29710414
Alignment:
Q  125 caacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 190  Q
    |||||||||||||| ||||||| |||||| || ||||||||| |||||||||||| ||| ||||||    
T  29710349 caacattagaggaacgatgcaaggagggagcaagggaggattaggacaagatagcgcatgttccaa 29710414  T

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Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 29851818 - 29851761
Alignment:
Q  251 ttatttttattcaaaaatatttttatatattctcaatcttgacttctttggaacccat 308  Q
    |||||||| ||||||||| |||||||||||||||| | |||||||||||| |||||||    
T  29851818 ttattttttttcaaaaatctttttatatattctcattgttgacttctttgtaacccat 29851761  T

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Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 30474071 - 30473965
Alignment:
Q  84 acacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcat 183  Q
    ||||||||||||||||||| || ||| ||||   ||||||||||||||| ||||  |||  ||  | ||||| || ||||| |||||||||||||| ||     
T  30474071 acacctcacttcacttgagtttttgaaaattcgaggttgcccaacattaaaggagcgattgaagaaaggaaccggtgaggactgggacaagatagcgcac 30473972  T
Q  184 attccaa 190  Q
    |||||||    
T  30473971 attccaa 30473965  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 30429671 - 30429542
Alignment:
Q  49 tgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaag 148  Q
    |||||| ||||| |||||||||| || |||||    |||||||| ||||||||| ||||| ||||| | ||||||||| |  ||  |||  |||| || |    
T  30429671 tgtgaaagattgagatgcttgccagaaggtattctgcacctcacatcacttgaggttctggcaatttatggttgcccagctgtaacggagcgatgtaagg 30429572  T
Q  149 agggaacaggggaggattgggacaagatag 178  Q
    |||||| ||| ||||| |||||||||||||    
T  30429571 agggaataggagaggactgggacaagatag 30429542  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 17981602 - 17981534
Alignment:
Q  121 tgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattcca 189  Q
    ||||||||||| ||| |  ||||||| |||||||| || || || |||||||||||||| |||||||||    
T  17981602 tgcccaacattggagaagcgatgcaatgagggaaccggagaagactgggacaagatagcccatattcca 17981534  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 29870612 - 29870580
Alignment:
Q  372 aaatgttctaattcaggtcattttcttcatcat 404  Q
    |||||||||||||||||| ||||||||||||||    
T  29870612 aaatgttctaattcaggtaattttcttcatcat 29870580  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 30481920 - 30481888
Alignment:
Q  201 tcaattttactggtaagatctctatttcccctt 233  Q
    |||||||||||||||||||||| ||||||||||    
T  30481920 tcaattttactggtaagatctcaatttcccctt 30481888  T

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Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 26706096 - 26705914
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattg 115  Q
    |||||||||||| | |||||| |||||||| ||||| ||||| ||||||||||||| ||||||||  ||||||||||||| |||||| |||||| ||||     
T  26706096 cttcaatcccttaggactctagagatttgggattgtaaaggaatgcgatgcttgccagagggtattcgacacctcacttctcttgagtttctgagaattt 26705997  T
Q  116 agggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaacaataaag 198  Q
     | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26705996 ggagttgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaataaag 26705914  T

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Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 20298032 - 20298191
Alignment:
Q  31 actctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacat 130  Q
    |||||||||||||||  |||||||||||||| ||||||||| || || ||   |||||||||||| |||||||||||||| || |    |||||| ||||    
T  20298032 actctaaagatttggggttgtgaaggattgcaatgcttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgccccacat 20298131  T
Q  131 tagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 190  Q
    || ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20298132 taaagttacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 20298191  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 20303931 - 20304072
Alignment:
Q  48 ttgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaa 147  Q
    |||| |||||||| |||||||||| || |||||  ||  |||||||||||||||| || |||  ||| | |  |||||||||||| ||||| | |||||     
T  20303931 ttgtaaaggattgagatgcttgcctgaaggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaag 20304030  T
Q  148 gagggaacaggggaggattgggacaagatagctcatattccaa 190  Q
      ||||||||| ||||||| |||||||||||| ||||||||||    
T  20304031 acgggaacaggcgaggatt-ggacaagatagcgcatattccaa 20304072  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 20297945 - 20298023
Alignment:
Q  16 cttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcactt 94  Q
    |||||||||||||||||||||   ||| |  ||||| ||||||||| ||||||||||||||||||   |||||||||||    
T  20297945 cttcaatcccttcgaactctaggaattagttattgtaaaggattgcaatgcttgccggagggtattcaacacctcactt 20298023  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 13615501 - 13615451
Alignment:
Q  140 gatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 190  Q
    ||||||| ||||||||| |||| || |||||||||||||| ||||||||||    
T  13615501 gatgcaaggagggaacatgggaagactgggacaagatagcgcatattccaa 13615451  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 20298402 - 20298434
Alignment:
Q  372 aaatgttctaattcaggtcattttcttcatcat 404  Q
    |||||||||||||||||| ||||||||||||||    
T  20298402 aaatgttctaattcaggtaattttcttcatcat 20298434  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 7098132 - 7098005
Alignment:
Q  63 atgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggag 162  Q
    ||||||||| || ||||| |||||||||||  |||||||     |||| ||||  || |||||||||||   |||  ||||||| ||||||||||||||     
T  7098132 atgcttgccagatggtattagacacctcaccgcacttgattcgttgactattgttggatgcccaacattgacggagcgatgcaaggagggaacaggggaa 7098033  T
Q  163 gattgggacaagatagctcatattccaa 190  Q
    || |||||||||||||| ||||||||||    
T  7098032 gactgggacaagatagcccatattccaa 7098005  T

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