View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_15 (Length: 471)
Name: NF6019_low_15
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 20479667 - 20479289
Alignment:
| Q |
18 |
aaaactagggcaaaatccactgcaccaaaccagtaaaaaacagcagcagaactttgatcactctaaaagcgcttcaactgacaccgaaaaaacggcctca |
117 |
Q |
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| T |
20479667 |
aaaactggggcaaaatccactgcaccaaacgagtaaaaaacagcagcagaactttgatcactctaaaagcgcttcaactgacaccgaaaaaacggcctca |
20479568 |
T |
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| Q |
118 |
aaaaatcaagtacaacaactccccagactaatcgaatccgtccagacagaaccaagaagtaacaaaaataacaatgaatcatgaaacaggaatgccccgt |
217 |
Q |
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| T |
20479567 |
aaaaatcaagtacaacaactccccagactaatcgaatccgtccagacagaaccaagaagtaacaaaaataacaatgaaccatgaaacaggaatgccccgt |
20479468 |
T |
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| Q |
218 |
aaagcagaaaaacacaactgctgctatggctacaccaatacctctgttgaacaccaatctaaaggaatcgaaaagaaagaatgtcaactctctgacaccg |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20479467 |
aaagcagaaaaacacaactgctgctacggctacaccaatacctctgttgaacaccaatctaaaggaatcgaaaagaaagaatgtcaactctctgacaccg |
20479368 |
T |
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| Q |
318 |
acaacacggaagctacattgccaatctagcgaaaagtaaatgtgtcaacgataactcgtcaaagtagtccaaggatttt |
396 |
Q |
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| T |
20479367 |
acaacacggaagcaacattgccaatctagcgaaaagtaaatgtgtcaatgataactcgtcaaagtagtccaaggatttt |
20479289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 414 - 471
Target Start/End: Complemental strand, 20478853 - 20478796
Alignment:
| Q |
414 |
tcaatttattagttatatacttcgtattaacctgcaagttgaatcaaaatagaaatcc |
471 |
Q |
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| T |
20478853 |
tcaatttattagttatatacttcgtattaacctgcaagttgaatcaaaatagaaatcc |
20478796 |
T |
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