View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6019_low_16 (Length: 461)
Name: NF6019_low_16
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 47201060 - 47200637
Alignment:
| Q |
19 |
cttacgaacctataatcattccaaaaaaccaaattaacatcaattaatacaaaattaacatcctaaaatagtaattaagacataaacaaactttgaagtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47201060 |
cttacgaacctataatcattccaaaaaaccaaattaacatcaattaatacaaaattaacatcctaaaatagtaattaagacataaacaaactttgaagtt |
47200961 |
T |
|
| Q |
119 |
ctttgaaattctaacgtacctcttttaagtactttgcgtaattaccaagaaaaagcggatttccaggatttgcttcaatcattgtacggtaatacaaatc |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47200960 |
ct----------aacgtacctcttttaagtactttgcgtaattaccaagaaaaagcggatttccaggatttgcttcaatcattgtacggtaatacaaatc |
47200871 |
T |
|
| Q |
219 |
ggtgctatcatttccatgatttgaatcaccgaatcttgaaactccaccgtcatttttgtcaaatccaccaccacctccttcttcaaccaaaacaagcatc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47200870 |
ggtgctatcatttccatgatttgaatcaccgaatcttgaaactccaccgtcgtttttgtcaaatccaccaccacctccttcttcaaccaaaacaagcatc |
47200771 |
T |
|
| Q |
319 |
gaaccaccgtctctggcatcgacttcactctggctttcttccaactcggttaaagaacaaagcgcggaactaaatgacgccgttcttgaacgagcaccga |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47200770 |
gaaccaccgtctctggcatcgacttcactctggctttcttcgaactcggttaaagaacaaagcgcggaactaaacgacgccgttcttgaacgagcaccga |
47200671 |
T |
|
| Q |
419 |
aagttccggttctgctctcttcttcatcttcatc |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
47200670 |
aagttccggttctgctctcttcttcatcttcatc |
47200637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 349 - 452
Target Start/End: Complemental strand, 20426289 - 20426186
Alignment:
| Q |
349 |
tggctttcttccaactcggttaaagaacaaagcgcggaactaaatgacgccgttcttgaacgagcaccgaaagttccggttctgctctcttcttcatctt |
448 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20426289 |
tggctttcttccaactctgttaaagaacaaagcgcggaaccaaacgacgccgttctggaacgagcaccgaaagttccggttccgctctcttcttcatctt |
20426190 |
T |
|
| Q |
449 |
catc |
452 |
Q |
| |
|
|||| |
|
|
| T |
20426189 |
catc |
20426186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University