View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_18 (Length: 459)
Name: NF6019_low_18
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 31398636 - 31398193
Alignment:
| Q |
1 |
accaatggatcttgaaccggtacaccatcgtcggtaactacaggtgcagtgataaatctaccacttcctactagaggaaacagttggcgacattcttcct |
100 |
Q |
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| T |
31398636 |
accaatggatcttgaaccggtacaccatcgtcggtaactacaggtgcagtgataaatctaccacttcctacaagaggaaacagttggcgacattcttcct |
31398537 |
T |
|
| Q |
101 |
tccactcagcatattgcgtcctgaaaatatagaaagaagttatacaacaaactaatcaacgatcgattagatttataatgtaaaacacaacaatcttaag |
200 |
Q |
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| T |
31398536 |
tccattcagcatattgcgtcctgaaaatatagaaagaagttatacaacaaactaatcaacgattgattagatttataatgtaaaacacaacaatcttaag |
31398437 |
T |
|
| Q |
201 |
gtgcagagtagaatgtgacagtaattaggagcttatgaaaggaaaaatgattaccttcggcgctgccttatctcttctctttcctcgaatgtactcgtgg |
300 |
Q |
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| T |
31398436 |
gtgcagagtagaatgtgacagtaattaggagcttatagaaggaaaaatgattaccttcggcgctgccttatctcttctctttcctcgaatgtactcgtgg |
31398337 |
T |
|
| Q |
301 |
gttcatagcaaccgagtagaaattcccaaacttctcctctaattgatggatggattccctggtttggaaatttcggtaatgtaagacaaattattagtag |
400 |
Q |
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| T |
31398336 |
gttcatagcaaccgagtagaaattcccaaacttctcctctaattgatggatggattccctggtttggaaatttcggtaatgtaagacaaattattagtag |
31398237 |
T |
|
| Q |
401 |
aatttcatgatacaaactaagctatcttttatcacaggataact |
444 |
Q |
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| T |
31398236 |
aatttcatgatacaaactaagctatcttttatcacaggataact |
31398193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 252 - 366
Target Start/End: Original strand, 34942242 - 34942356
Alignment:
| Q |
252 |
taccttcggcgctgccttatctcttctctttcctcgaatgtactcgtgggttcatagcaaccgagtagaaattcccaaacttctcctctaattgatggat |
351 |
Q |
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||||||||||| | ||||| | |||||||| || |||||||| | || ||||||||||| |||| |||||||||||||||||| ||||||||||||| |
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| T |
34942242 |
taccttcggcgttctcttatttgatctctttcgtcaaatgtactttttgggtcatagcaaccaagtaaaaattcccaaacttctcccctaattgatggat |
34942341 |
T |
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| Q |
352 |
ggattccctggtttg |
366 |
Q |
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||| ||||||||||| |
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| T |
34942342 |
ggactccctggtttg |
34942356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 34941918 - 34941966
Alignment:
| Q |
49 |
gtgataaatctaccacttcctactagaggaaacagttggcgacattctt |
97 |
Q |
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| T |
34941918 |
gtgataaatcgaccacttccaacaagaggaaacaattggcgacattctt |
34941966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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