View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6019_low_19 (Length: 446)

Name: NF6019_low_19
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6019_low_19
NF6019_low_19
[»] scaffold0272 (1 HSPs)
scaffold0272 (19-446)||(2134-2561)
[»] chr7 (3 HSPs)
chr7 (317-433)||(34800171-34800287)
chr7 (374-423)||(11888908-11888957)
chr7 (302-335)||(26156703-26156736)
[»] chr8 (1 HSPs)
chr8 (355-425)||(10909517-10909587)
[»] chr4 (5 HSPs)
chr4 (64-150)||(1611238-1611324)
chr4 (354-418)||(5037956-5038020)
chr4 (355-425)||(13725842-13725912)
chr4 (64-131)||(53561928-53561995)
chr4 (376-433)||(1611551-1611612)
[»] chr6 (3 HSPs)
chr6 (65-181)||(15858141-15858257)
chr6 (317-419)||(15858393-15858495)
chr6 (300-336)||(17103164-17103200)
[»] chr2 (2 HSPs)
chr2 (379-422)||(34326254-34326297)
chr2 (301-334)||(14849237-14849270)
[»] chr3 (1 HSPs)
chr3 (374-423)||(48721701-48721750)
[»] chr5 (1 HSPs)
chr5 (304-336)||(19110114-19110146)


Alignment Details
Target: scaffold0272 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 2134 - 2561
Alignment:
Q  19 gaggagagtactaattcggtggagcaaggcgtggtttttgattccatttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2134 gaggagagtactaattcggtggagcaaggcgtggtttttgattccatttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttc 2233  T
Q  119 atgatagaattccgtcaaaagtgaatttggcgtatagacatgtgttacctccggaggcttctctcaactgtgatttatatttgaggagggctgagtcgac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2234 atgatagaattccgtcaaaagtgaatttggcgtatagacatgtgttacctccggaggcttctctcaactgtgatttatatttgaggatggctgagtcgac 2333  T
Q  219 aaaccatctgtttattcacttgtcttttgcttcagaagtgtggcaaggtttgttcggctggcaggagttcagctttgtgttacctccgaatttgttcatt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2334 aaaccatctgtttattcacttgtcttttgcttcagaagtgtggcaaggtttgttcggctggcaggatttcagctttgtgttacctccgaatttgttcatt 2433  T
Q  319 cattgggagtgttggaatgggggtgaatcaaagatgaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaa 418  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2434 cattgggagtgttggagtgggggtgaatcaaagaagaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaa 2533  T
Q  419 atgatcgcatctttacaaatacaatttg 446  Q
    ||||||||||||||||||||||||||||    
T  2534 atgatcgcatctttacaaatacaatttg 2561  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 317 - 433
Target Start/End: Complemental strand, 34800287 - 34800171
Alignment:
Q  317 ttcattgggagtgttggaatgggggtgaatcaaagatgaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgag 416  Q
    |||| |||||||| ||||||||||  |  ||||| | |||| |||||||||| ||   |||||||||||| |||||||| |||||||||||||||||| |    
T  34800287 ttcactgggagtgatggaatggggcagtgtcaaataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagtatttggagggtgcg 34800188  T
Q  417 aaatgatcgcatcttta 433  Q
    ||||||||| |||||||    
T  34800187 aaatgatcgtatcttta 34800171  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 11888908 - 11888957
Alignment:
Q  374 ggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgat 423  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  11888908 ggttgatttggcatcccgcggtttggagtatttggagggcgagaaatgat 11888957  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 26156703 - 26156736
Alignment:
Q  302 ctccgaatttgttcattcattgggagtgttggaa 335  Q
    ||||||||||||| ||||||||||||||||||||    
T  26156703 ctccgaatttgtttattcattgggagtgttggaa 26156736  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 10909587 - 10909517
Alignment:
Q  355 aagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcg 425  Q
    |||||||||| |||||   ||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  10909587 aagattcgtagaggttttcggttgatttggcacgccgcggtttggagtttatggagggtgagaaatgatcg 10909517  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 1611238 - 1611324
Alignment:
Q  64 atttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttcatgatagaattccgtcaaaagtgaatttggcg 150  Q
    ||||||||||| ||||| ||||||||||| ||||  || || ||||||||  ||||||||||||| |||||||||||||||||||||    
T  1611238 atttggaaaagtccggcaccgtccaaagtggtggccttctcttggaagctttttcatgatagaataccgtcaaaagtgaatttggcg 1611324  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 5037956 - 5038020
Alignment:
Q  354 gaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaa 418  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||| |||||||||| ||||||    
T  5037956 gaagattcgtaaaggttactggttgatttggcatgccaaggtttggaatatttggaggctgagaa 5038020  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 13725842 - 13725912
Alignment:
Q  355 aagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcg 425  Q
    |||||||||| |||||   ||||||||||||||||||||||||||||| | ||||||| ||||||||||||    
T  13725842 aagattcgtagaggttttcggttgatttggcacgccgcggtttggagtttatggagggcgagaaatgatcg 13725912  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 53561928 - 53561995
Alignment:
Q  64 atttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttcatgatagaattcc 131  Q
    |||||||| || |||||||||||||| ||||| || || || ||||| ||||| ||||||||||||||    
T  53561928 atttggaagagtccggcgccgtccaaggtcgttgtcttctcgtggaaactcctccatgatagaattcc 53561995  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 433
Target Start/End: Original strand, 1611551 - 1611612
Alignment:
Q  376 ttgatttggcacgccgcggttt----ggagtatttggagggtgagaaatgatcgcatcttta 433  Q
    |||||||| || ||||||||||    ||||||||||||||||||| ||||||||||| ||||    
T  1611551 ttgatttgccatgccgcggtttaattggagtatttggagggtgaggaatgatcgcattttta 1611612  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 15858141 - 15858257
Alignment:
Q  65 tttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttcatgatagaattccgtcaaaagtgaatttggcgtatagacatgtgtt 164  Q
    |||||||||| ||||| ||||| ||||| ||||  || || |||||||| |||||||||||||| || || |||| ||| ||||||  |||||| ||| |    
T  15858141 tttggaaaagtccggcaccgtctaaagttgtggcattctcttggaagcttcttcatgatagaataccctctaaagcgaacttggcggttagacaggtgct 15858240  T
Q  165 acctccggaggcttctc 181  Q
    |||||||||||||||||    
T  15858241 acctccggaggcttctc 15858257  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 419
Target Start/End: Original strand, 15858393 - 15858495
Alignment:
Q  317 ttcattgggagtgttggaatgggggtgaatcaaagatgaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgag 416  Q
    |||||||||||||||||| |||||  || ||||| | |||| | || || || | | ||||||||||||| || ||||||||||||||||||||||||||    
T  15858393 ttcattgggagtgttggagtggggcggagtcaaataagaaggtccgaaacgggttcaggttgatttggcatgctgcggtttggagtatttggagggtgag 15858492  T
Q  417 aaa 419  Q
    |||    
T  15858493 aaa 15858495  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 17103164 - 17103200
Alignment:
Q  300 acctccgaatttgttcattcattgggagtgttggaat 336  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  17103164 acctcctaatttgtccattcattgggagtgttggaat 17103200  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Original strand, 34326254 - 34326297
Alignment:
Q  379 atttggcacgccgcggtttggagtatttggagggtgagaaatga 422  Q
    |||||||||||||||||||||| ||||||||| || ||||||||    
T  34326254 atttggcacgccgcggtttggactatttggagagttagaaatga 34326297  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 14849270 - 14849237
Alignment:
Q  301 cctccgaatttgttcattcattgggagtgttgga 334  Q
    |||||||||||||| |||||||||||||||||||    
T  14849270 cctccgaatttgtttattcattgggagtgttgga 14849237  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 48721701 - 48721750
Alignment:
Q  374 ggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgat 423  Q
    |||| |||||||| || ||||||||||||||||||||||  |||||||||    
T  48721701 ggttaatttggcatgcggcggtttggagtatttggagggcaagaaatgat 48721750  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 19110146 - 19110114
Alignment:
Q  304 ccgaatttgttcattcattgggagtgttggaat 336  Q
    ||||||||||||||||||||| |||||||||||    
T  19110146 ccgaatttgttcattcattggaagtgttggaat 19110114  T

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