View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6019_low_2 (Length: 903)

Name: NF6019_low_2
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6019_low_2
NF6019_low_2
[»] chr2 (17 HSPs)
chr2 (309-888)||(26579888-26580468)
chr2 (18-212)||(26580603-26580799)
chr2 (577-695)||(18183442-18183560)
chr2 (577-720)||(14407964-14408108)
chr2 (659-718)||(3008417-3008476)
chr2 (577-720)||(5511787-5511929)
chr2 (606-706)||(36901147-36901247)
chr2 (616-706)||(21374249-21374339)
chr2 (604-654)||(21373995-21374045)
chr2 (618-706)||(9889318-9889406)
chr2 (636-712)||(37253268-37253344)
chr2 (664-718)||(33456024-33456078)
chr2 (515-571)||(886745-886802)
chr2 (664-720)||(12931570-12931626)
chr2 (515-584)||(21373875-21373945)
chr2 (640-721)||(11339674-11339754)
chr2 (551-584)||(39583429-39583462)
[»] chr3 (9 HSPs)
chr3 (577-721)||(39225009-39225153)
chr3 (605-706)||(51917884-51917985)
chr3 (577-720)||(54861501-54861644)
chr3 (515-573)||(50070546-50070604)
chr3 (583-716)||(25568479-25568612)
chr3 (664-720)||(50187402-50187458)
chr3 (546-584)||(34250494-34250532)
chr3 (547-581)||(39225174-39225208)
chr3 (577-706)||(35035076-35035205)
[»] chr7 (25 HSPs)
chr7 (515-719)||(21033816-21034022)
chr7 (577-717)||(422649-422789)
chr7 (576-720)||(14595866-14596010)
chr7 (576-720)||(16015394-16015538)
chr7 (583-720)||(25589056-25589192)
chr7 (605-703)||(32000821-32000919)
chr7 (577-720)||(30610793-30610934)
chr7 (616-720)||(39079926-39080030)
chr7 (605-720)||(14596178-14596292)
chr7 (605-720)||(16015706-16015820)
chr7 (604-715)||(21033610-21033722)
chr7 (623-706)||(10406585-10406668)
chr7 (605-721)||(46870318-46870433)
chr7 (515-720)||(21048694-21048906)
chr7 (577-720)||(41387506-41387649)
chr7 (577-655)||(41389282-41389360)
chr7 (609-666)||(28359092-28359149)
chr7 (605-706)||(30898989-30899090)
chr7 (664-717)||(39164690-39164743)
chr7 (515-582)||(39079773-39079841)
chr7 (545-584)||(12840714-12840753)
chr7 (545-584)||(23721066-23721105)
chr7 (669-712)||(27820914-27820957)
chr7 (513-566)||(32000709-32000763)
chr7 (606-655)||(12840622-12840671)
[»] chr8 (14 HSPs)
chr8 (577-718)||(30590424-30590565)
chr8 (577-703)||(39590674-39590799)
chr8 (605-721)||(26642591-26642707)
chr8 (546-644)||(16213197-16213295)
chr8 (577-700)||(34529963-34530086)
chr8 (259-301)||(32977273-32977315)
chr8 (577-655)||(38887077-38887155)
chr8 (545-701)||(30602843-30602997)
chr8 (657-718)||(30966069-30966130)
chr8 (637-701)||(18900761-18900825)
chr8 (393-429)||(32977362-32977398)
chr8 (545-580)||(38887024-38887059)
chr8 (545-583)||(34529910-34529948)
chr8 (669-715)||(34621955-34622001)
[»] chr6 (6 HSPs)
chr6 (577-720)||(1206164-1206307)
chr6 (577-719)||(1205850-1205992)
chr6 (515-584)||(1206006-1206076)
chr6 (584-693)||(18286869-18286977)
chr6 (657-720)||(130671-130734)
chr6 (393-422)||(30705248-30705277)
[»] chr5 (15 HSPs)
chr5 (577-719)||(16275217-16275359)
chr5 (577-706)||(4796334-4796463)
chr5 (577-720)||(31973423-31973562)
chr5 (577-712)||(15844220-15844352)
chr5 (661-721)||(31973134-31973194)
chr5 (664-720)||(35661037-35661092)
chr5 (659-720)||(30366670-30366731)
chr5 (664-720)||(15844510-15844566)
chr5 (751-845)||(21954523-21954617)
chr5 (515-584)||(31973267-31973337)
chr5 (672-718)||(32337537-32337583)
chr5 (605-706)||(904752-904853)
chr5 (515-575)||(904909-904970)
chr5 (684-721)||(22198985-22199022)
chr5 (609-690)||(38603927-38604007)
[»] chr1 (22 HSPs)
chr1 (577-720)||(19810996-19811139)
chr1 (607-712)||(19809951-19810056)
chr1 (577-720)||(34626759-34626902)
chr1 (604-720)||(17557708-17557822)
chr1 (608-720)||(19810683-19810795)
chr1 (577-720)||(41590525-41590660)
chr1 (577-720)||(41590214-41590356)
chr1 (635-720)||(7525021-7525106)
chr1 (578-695)||(18998370-18998488)
chr1 (577-647)||(40566324-40566394)
chr1 (670-711)||(10239500-10239541)
chr1 (669-721)||(347339-347391)
chr1 (661-720)||(19609169-19609229)
chr1 (521-584)||(19810839-19810903)
chr1 (577-641)||(51188878-51188942)
chr1 (545-584)||(7907987-7908026)
chr1 (577-707)||(12410381-12410512)
chr1 (409-443)||(13203630-13203664)
chr1 (515-584)||(41590370-41590439)
chr1 (669-718)||(347111-347160)
chr1 (583-715)||(18998693-18998825)
chr1 (684-721)||(21641404-21641441)
[»] chr4 (17 HSPs)
chr4 (581-708)||(26942869-26942995)
chr4 (605-706)||(48046361-48046462)
chr4 (577-712)||(54595370-54595505)
chr4 (577-720)||(30490939-30491079)
chr4 (577-720)||(52043062-52043206)
chr4 (583-706)||(23311469-23311592)
chr4 (605-720)||(3137621-3137734)
chr4 (605-720)||(3136930-3137044)
chr4 (521-584)||(46332675-46332740)
chr4 (393-438)||(35390416-35390461)
chr4 (259-296)||(37514410-37514447)
chr4 (403-438)||(18194746-18194781)
chr4 (545-584)||(26942729-26942768)
chr4 (515-584)||(48046201-48046271)
chr4 (684-718)||(50830704-50830738)
chr4 (515-584)||(54595203-54595273)
chr4 (679-720)||(24001540-24001581)
[»] scaffold0002 (2 HSPs)
scaffold0002 (403-438)||(286265-286300)
scaffold0002 (403-438)||(292621-292656)


Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 309 - 888
Target Start/End: Complemental strand, 26580468 - 26579888
Alignment:
Q  309 gtacaattgtacttacaaagtcactaatctattttataggatgaactaatttttcca-tgcttacctaaaattaggtcatcatcaataatttgaatcata 407  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||  ||||||||||||| |||||| || ||||| ||||||||  ||    
T  26580468 gtacaattgtgcttacaaagtcactgttctattttataggatgaactaatttttcctgtgcttacctaaaaataggtcgtcgtcaatgatttgaatagta 26580369  T
Q  408 atttctttgaaattttagccacaccaatatcgaaagaggcgctacattgtggactacactaatgctggtggcaaatagcaatgagaaaaagggaatcttt 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  | |||||||||||||| ||    
T  26580368 atttctttgaaattttagccacaccaatatcgaaagaggcgctacattgtggaccacactaatgctggtggcaaatagcttttagaaaaagggaatcatt 26580269  T
Q  508 cagttattgttgaaaattttgccttcattgtggaccgccctagccgcctaattgcggcatttgggttgtcttcattgtgttgggtgtgaaggtttcaatt 607  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26580268 cagttattgttgaaaattctgccttcattgtggaccgccctagccgcctaattgcggcatttgggttgtcttcattgtgttgggtgtgaaggtttcaatt 26580169  T
Q  608 tagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaac 707  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26580168 tagtcccgcattgcctagaaatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttataagccagtcttgtaaggttgaattaggcccaac 26580069  T
Q  708 ccaaattctaagaggaaatcttatttttgggaatatttttccattagaaataggtagagagcactagccctctgcaaagaggttgctccgtggttgagga 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26580068 ccaaattctaagaggaaatcttatttttgggaatatttttccattagaaataggtagagagcacttgccctctgcaaagaggttgctccgtggttgagga 26579969  T
Q  808 accaattcctcagtaaatcctcgtttgaattcaataatgcacactatcttactcatttctatcttattttattctctctgt 888  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  26579968 accaattcctcagtaaatcctcgtttgaattcaataatacacactaccttactcatttctatcttattttattctctctgt 26579888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 26580799 - 26580603
Alignment:
Q  18 gtatattattcaatttcaagcgtgttggttaggtatgatcaaatttcaatatacatgtcaatgccctttaactgtttgttgaaattattcttctaatact 117  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||  |||||||||||||    
T  26580799 gtatattattcaatttcaaacctgttagttaggtatgatcaaatttgaatatacatgtca-tgacctttaactgtttgttgaaatgtttcttctaatact 26580701  T
Q  118 gccgctaacatctcagtttccttactttatcaaaattaaagggaacgattnnnnnnnccaacttcttggctttctc---aggaaccccaatttcagta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||| ||   |||||||||||||||||||    
T  26580700 gccgctaacatctcagtttccttactttatcaaaattaaagggaaagattcaaagaaccaacttcttggctttgtcaggaggaaccccaatttcagta 26580603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 577 - 695
Target Start/End: Original strand, 18183442 - 18183560
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||||||||||| ||  |  ||||||||| | ||||||| |||||||||  |||||||||||| ||||||| |||||||| || ||||||||    
T  18183442 cttcattgtgttgggtgtgatgggatggatttagtcctgaattgccttgagatatggcttgtgtagtgtttataaagcttgggcagccttcaccttacaa 18183541  T
Q  677 gccagtcttgtaaggttga 695  Q
    ||| || ||||||||||||    
T  18183542 gccggttttgtaaggttga 18183560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 577 - 720
Target Start/End: Original strand, 14407964 - 14408108
Alignment:
Q  577 cttcattgtgttgggtgtgaaggt-ttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttaca 675  Q
    ||||||||||||| |||||||||  ||  |||| ||| | ||||| |||||||||||| ||||||||||||| ||||||| | ||| ||||  |||||||    
T  14407964 cttcattgtgttgagtgtgaaggggttggatttggtctcacattgtctagagatatggtctgtgtagtgtttataaagcttgtgcaacccttaccttaca 14408063  T
Q  676 agccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||| || |||||||||||| ||||||||  || |||||||||||    
T  14408064 agccggttttgtaaggttgagttaggcccggccgaaattctaaga 14408108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 659 - 718
Target Start/End: Original strand, 3008417 - 3008476
Alignment:
Q  659 gcagccctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaa 718  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  3008417 gcagccctcaccttacaagccagttttgtaaggttgagttaggcccaacccaaattctaa 3008476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 577 - 720
Target Start/End: Complemental strand, 5511929 - 5511787
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    ||||||||||||| |||||||||  |  |||||||||   ||||||||||||||| |  || ||||||||| ||||||| |||| |||||| ||| | ||    
T  5511929 cttcattgtgttgtgtgtgaaggggtgtatttagtccaatattgcctagagatatagcttg-gtagtgtttataaagcttgggctgccctcacctaaaaa 5511831  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    ||| || ||  |||||||| ||||||||||||||||||||||||    
T  5511830 gccggttttagaaggttgagttaggcccaacccaaattctaaga 5511787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 606 - 706
Target Start/End: Original strand, 36901147 - 36901247
Alignment:
Q  606 tttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccca 705  Q
    ||||||||| |||||| ||||||||||   |||||||||||| |||||||   ||||||||| |||||||||||| | |||||||| ||| |||||||||    
T  36901147 tttagtcccccattgcttagagatatgacatgtgtagtgtttataaagcttaagcagccctcaccttacaagccatttttgtaaggatgagttaggccca 36901246  T
Q  706 a 706  Q
    |    
T  36901247 a 36901247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 616 - 706
Target Start/End: Original strand, 21374249 - 21374339
Alignment:
Q  616 cattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaa 706  Q
    |||||| ||||||||||| ||||||||||||||||||||  ||||| || || ||||||||||  || |||||||| ||||||| ||||||    
T  21374249 cattgcatagagatatggcctgtgtagtgtttgtaaagcatgggcaaccttcaccttacaagctggttttgtaaggatgaattatgcccaa 21374339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 604 - 654
Target Start/End: Original strand, 21373995 - 21374045
Alignment:
Q  604 aatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagc 654  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  21373995 aatttagtcccacattgcctagagatatggcctgtgtagtgtttataaagc 21374045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 618 - 706
Target Start/End: Complemental strand, 9889406 - 9889318
Alignment:
Q  618 ttgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaa 706  Q
    ||||||||||||||| || ||||||||||| | ||  | ||||||||||| || |||||||| || |||||||| ||| ||||||||||    
T  9889406 ttgcctagagatatgagccgtgtagtgtttatgaaatttgggcagccctcaccatacaagccggttttgtaaggatgagttaggcccaa 9889318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 636 - 712
Target Start/End: Complemental strand, 37253344 - 37253268
Alignment:
Q  636 tgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaa 712  Q
    |||||||||||||||||||| ||||| | ||| ||| ||||||| || |||||||||| | ||||| ||||||||||    
T  37253344 tgtgtagtgtttgtaaagcttgggcaacactcacctcacaagccggttttgtaaggttcagttaggtccaacccaaa 37253268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 718
Target Start/End: Original strand, 33456024 - 33456078
Alignment:
Q  664 cctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaa 718  Q
    |||| |||||||| || || |||||||||||| ||||||||||||||||||||||    
T  33456024 cctcaccttacaaaccggttttgtaaggttgagttaggcccaacccaaattctaa 33456078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 571
Target Start/End: Original strand, 886745 - 886802
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccgccct-agccgcctaattgcggcatttgg 571  Q
    |||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||||||    
T  886745 tgttgaaaattttgccttcattgtggtccgacctgaaccgcctaattgtggcatttgg 886802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 720
Target Start/End: Original strand, 12931570 - 12931626
Alignment:
Q  664 cctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||| |||||||||||||| ||| |||| |||||||  |||||||||||||||||||    
T  12931570 cctcaccttacaagccagttttgcaaggatgaattaaacccaacccaaattctaaga 12931626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 584
Target Start/End: Original strand, 21373875 - 21373945
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccgc-cctagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    ||||||||||| ||||||||||| || | || |||||| ||||| |||||||||||| |||| ||||||||    
T  21373875 tgttgaaaattctgccttcattgcggtctgctcctagctgcctacttgcggcatttgtgttgccttcattg 21373945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 721
Target Start/End: Complemental strand, 11339754 - 11339674
Alignment:
Q  640 tagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaagag 721  Q
    |||||||| |||| |  ||||||| ||| ||||||||| | || ||||||| || | |||||||||||||||||||||||||    
T  11339754 tagtgtttataaatcctgggcagctctcaccttacaagtcggttttgtaagttt-agttaggcccaacccaaattctaagag 11339674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 584
Target Start/End: Original strand, 39583429 - 39583462
Alignment:
Q  551 ccgcctaattgcggcatttgggttgtcttcattg 584  Q
    ||||||||||||||||||||||||| ||||||||    
T  39583429 ccgcctaattgcggcatttgggttgccttcattg 39583462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 7e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 577 - 721
Target Start/End: Complemental strand, 39225153 - 39225009
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||||||||||||||  |   |||||||||||||||||||||||||||| || |||||||  | ||||| | ||| ||| ||| ||||||||    
T  39225153 cttcattgtgttgggtgtgaaggcgtgggtttagtcccgcattgcctagagatatggcctttgtagtgcatataaagattgggaagctctcgccttacaa 39225054  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaagag 721  Q
     || ||||||||||||||| |||||||||||||||||||||||||    
T  39225053 accggtcttgtaaggttgagttaggcccaacccaaattctaagag 39225009  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 605 - 706
Target Start/End: Original strand, 51917884 - 51917985
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccc 704  Q
    |||||||||  ||||||||||||||||||  | |||||||||| ||||||| |||| ||||||  ||||||||||||| |||||||| ||| || |||||    
T  51917884 atttagtcctacattgcctagagatatggcatatgtagtgtttataaagcttgggccgccctcagcttacaagccagttttgtaaggatgagttgggccc 51917983  T
Q  705 aa 706  Q
    ||    
T  51917984 aa 51917985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 577 - 720
Target Start/End: Original strand, 54861501 - 54861644
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||| ||||||||||||||||||  |  |||||||| | | |||||| || ||||||  | || ||||||| ||||||| ||| |||  |  ||||||||    
T  54861501 cttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtgtttataaagcttgggtagcagttaccttacaa 54861600  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    || ||| |||| ||||||| ||| |||||||||||||| |||||    
T  54861601 gctagttttgttaggttgagttacgcccaacccaaattttaaga 54861644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 573
Target Start/End: Original strand, 50070546 - 50070604
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccgccctagccgcctaattgcggcatttgggt 573  Q
    ||||| |||||| ||||||||||||| || |||||||| ||||||||| ||||||||||    
T  50070546 tgttggaaatttcgccttcattgtggtccaccctagccacctaattgcagcatttgggt 50070604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 716
Target Start/End: Original strand, 25568479 - 25568612
Alignment:
Q  583 tgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagt 682  Q
    |||||||||||||||||  |   |||||  || ||||||||||||| |||  || |||||||||| |||| || |||||||  || |||||| |||| ||    
T  25568479 tgtgttgggtgtgaaggggtgggtttagcaccacattgcctagagacatgacctttgtagtgtttataaaccttgggcagctttcaccttactagccggt 25568578  T
Q  683 cttgtaaggttgaattaggcccaacccaaattct 716  Q
     | || ||||||| |||||||||| |||||||||    
T  25568579 ttcgttaggttgagttaggcccaaaccaaattct 25568612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 720
Target Start/End: Complemental strand, 50187458 - 50187402
Alignment:
Q  664 cctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||| ||||||||| |||| | |||||||||| ||||||||||| ||||||||||||    
T  50187458 cctcaccttacaagtcagtttagtaaggttgagttaggcccaactcaaattctaaga 50187402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 584
Target Start/End: Complemental strand, 34250532 - 34250494
Alignment:
Q  546 cctagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  34250532 cctagccgcctaattgcgacatttgggttgccttcattg 34250494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 547 - 581
Target Start/End: Complemental strand, 39225208 - 39225174
Alignment:
Q  547 ctagccgcctaattgcggcatttgggttgtcttca 581  Q
    ||||||||||||||||||||||||||||| |||||    
T  39225208 ctagccgcctaattgcggcatttgggttgccttca 39225174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 706
Target Start/End: Original strand, 35035076 - 35035205
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||| ||| ||||||  |  | |||||| | |||| | |||||||||||  |||||  | ||| ||||||| ||||||||||||| ||||||    
T  35035076 cttcattgtgttaggtttgaaggggtggacttagtctcacatttcttagagatatggcttgtgttctatttataaagcttgggcagccctctctttacaa 35035175  T
Q  677 gccagtcttgtaaggttgaattaggcccaa 706  Q
    | | || |||| ||| ||| ||||||||||    
T  35035176 gtcggttttgttaggatgagttaggcccaa 35035205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 515 - 719
Target Start/End: Complemental strand, 21034022 - 21033816
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccgccc-tagccgcctaattgcggcatttgggttgtcttcattgtgttgggtgtgaaggtttcaatttagtcc 613  Q
    ||||| |||||  |||||||||| || |||||| ||||| ||||||||  |||||||||||| ||||||| ||||| |||||||||  | |||||||||     
T  21034022 tgttggaaattccgccttcattgcggtccgcccctagccacctaattgtagcatttgggttgccttcattatgttgtgtgtgaaggggtgaatttagtct 21033923  T
Q  614 cgcattgcctagagatatgggctgtgtagtgtttgt-aaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaa 712  Q
    | ||||||||||||||||||  | ||| |||||| | |||||| ||||||||||| ||||| |||||| | |||||||||||| |||||| ||||  |||    
T  21033922 cacattgcctagagatatggcatttgtggtgtttataaaagcttgggcagccctcaccttaaaagccaattttgtaaggttgagttaggctcaactgaaa 21033823  T
Q  713 ttctaag 719  Q
    |||||||    
T  21033822 ttctaag 21033816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 577 - 717
Target Start/End: Complemental strand, 422789 - 422649
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||||||||||||||  | | |||| |||| |||||||||||||||||| || || |||| || ||||||| ||||||| ||| ||||| ||    
T  422789 cttcattgtgttgggtgtgaaggggtgactttaatcccacattgcctagagatatggcctatgcagtgattataaagcttgggcagctctcaccttaaaa 422690  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattcta 717  Q
     || || | ||||||||||||| ||||||||| ||||||||    
T  422689 tccggtttcgtaaggttgaattgggcccaacctaaattcta 422649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 576 - 720
Target Start/End: Complemental strand, 14596010 - 14595866
Alignment:
Q  576 tcttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttaca 675  Q
    ||||||||||||||  ||||||||  |  |||||| ||| | ||||||||||||||||  |||||||||||| ||||| | ||||||||||| ||||| |    
T  14596010 tcttcattgtgttgactgtgaaggggtggatttagccccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcaccttaaa 14595911  T
Q  676 agccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||| || |||||||||||| ||||| |||| ||||||| |||||    
T  14595910 agccggttttgtaaggttgagttaggtccaatccaaattttaaga 14595866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 576 - 720
Target Start/End: Complemental strand, 16015538 - 16015394
Alignment:
Q  576 tcttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttaca 675  Q
    ||||||||||||||  ||||||||  |  |||||||||| | ||||||||||||||||  |||||||||||| ||||| | ||||||||||| ||||| |    
T  16015538 tcttcattgtgttgactgtgaaggggtggatttagtcccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcaccttaaa 16015439  T
Q  676 agccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||  || |||||||||||| ||||| |||| ||||||| |||||    
T  16015438 agctggttttgtaaggttgagttaggtccaatccaaattttaaga 16015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 583 - 720
Target Start/End: Complemental strand, 25589192 - 25589056
Alignment:
Q  583 tgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagt 682  Q
    |||||||||||||||||  | ||||||||||  |||||| | || ||||||  |||||||||||| |||| || ||||||||||||||||||||||| ||    
T  25589192 tgtgttgggtgtgaaggggtgaatttagtcca-cattgcttggatatatggcatgtgtagtgtttataaaacttgggcagccctctccttacaagccggt 25589094  T
Q  683 cttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
     ||||||   ||| ||||| ||||||||||||||||||    
T  25589093 tttgtaatactgagttaggtccaacccaaattctaaga 25589056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 605 - 703
Target Start/End: Original strand, 32000821 - 32000919
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcc 703  Q
    |||||||||| || ||| ||||||||||  ||||||||||||| ||||||| ||||||||||| ||||||||||| || |||||||| ||| |||||||    
T  32000821 atttagtcccacaatgcttagagatatgtcctgtgtagtgtttataaagcttgggcagccctcaccttacaagccggttttgtaaggatgagttaggcc 32000919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 577 - 720
Target Start/End: Complemental strand, 30610934 - 30610793
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttac-a 675  Q
    ||||||||||||||||| |||||  |  ||||| || | |||||||||||||||||| ||   |||||||| ||||||| ||||||||||| |||||| |    
T  30610934 cttcattgtgttgggtgggaaggggtggatttaatctcacattgcctagagatatggcct---tagtgtttataaagcttgggcagccctcaccttacaa 30610838  T
Q  676 agccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||  || |||||||||||| |||| ||||||| |||| ||||||    
T  30610837 agctggttttgtaaggttgagttagacccaacctaaatgctaaga 30610793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 616 - 720
Target Start/End: Complemental strand, 39080030 - 39079926
Alignment:
Q  616 cattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattc 715  Q
    |||||||||||||||||   |||||||||||| |||| || | ||||||| | | ||||||||| || |||||||||| | ||||||||||||||||||     
T  39080030 cattgcctagagatatgacatgtgtagtgtttataaaacttgtgcagcccccactttacaagccggttttgtaaggtttagttaggcccaacccaaattt 39079931  T
Q  716 taaga 720  Q
    |||||    
T  39079930 taaga 39079926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 605 - 720
Target Start/End: Complemental strand, 14596292 - 14596178
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccc 704  Q
    ||||| |||| ||||||||||||||| ||  |  |||||||||  |||||| ||||||||||| ||||||||||| || |||||||||||| ||||||||    
T  14596292 atttattcccacattgcctagagataaggctttcgtagtgtttagaaagcttgggcagccctcaccttacaagccggt-ttgtaaggttgagttaggccc 14596194  T
Q  705 aacccaaattctaaga 720  Q
    || | ||||| |||||    
T  14596193 aatcaaaattttaaga 14596178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 605 - 720
Target Start/End: Complemental strand, 16015820 - 16015706
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccc 704  Q
    ||||| |||| ||||||||||||||||||  |  |||||||||  |||||| ||||||||||| ||||||||| | || |||||||||||| ||||||||    
T  16015820 atttattcccacattgcctagagatatggctttcgtagtgtttagaaagcttgggcagccctcaccttacaagtcggt-ttgtaaggttgagttaggccc 16015722  T
Q  705 aacccaaattctaaga 720  Q
    || | ||||| |||||    
T  16015721 aatcaaaattttaaga 16015706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 604 - 715
Target Start/End: Complemental strand, 21033722 - 21033610
Alignment:
Q  604 aatttagtcccgcattgcctagagatatgggctgtgtagtgtttgt-aaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggc 702  Q
    ||||||||||| | |||||||||||||||| ||||||| ||||| | ||||||   |||||| || ||||||| ||  || |||||||||||| ||||||    
T  21033722 aatttagtcccacgttgcctagagatatggcctgtgtaatgtttttaaaagcttcagcagccttcaccttacatgctggttttgtaaggttgagttaggc 21033623  T
Q  703 ccaacccaaattc 715  Q
    |||| ||||||||    
T  21033622 ccaatccaaattc 21033610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 623 - 706
Target Start/End: Complemental strand, 10406668 - 10406585
Alignment:
Q  623 tagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaa 706  Q
    ||||||||||| ||||||||||||| ||||||  ||||||||||| || |||||||  || |||||||| ||| ||||||||||    
T  10406668 tagagatatggcctgtgtagtgtttataaagcatgggcagccctcaccgtacaagctggttttgtaaggatgagttaggcccaa 10406585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 721
Target Start/End: Original strand, 46870318 - 46870433
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccc 704  Q
    |||||||||| |||||||||| |||||||  |||||||| ||| ||||||| | ||| |||||   ||| ||||| || |||||||| ||| ||| | ||    
T  46870318 atttagtcccacattgcctagggatatggcatgtgtagtatttataaagcttgagcaaccctcaaattaaaagcc-gttttgtaaggatgagttaagtcc 46870416  T
Q  705 aacccaaattctaagag 721  Q
    |||||||||||||||||    
T  46870417 aacccaaattctaagag 46870433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 515 - 720
Target Start/End: Complemental strand, 21048906 - 21048694
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccgccc-tagccgcctaattgcggcatttgggttgtcttcattgtgttgggtgtgaaggtttcaatttagtcc 613  Q
    ||||| |||||| |||||||||| || | |||| ||||| ||||||||  ||||||||||||  || | ||||||||||||   ||  |  ||||||||     
T  21048906 tgttggaaatttcgccttcattgcggtctgcccctagccacctaattgtcgcatttgggttgcgtttactgtgttgggtgtatgggggtgtatttagtct 21048807  T
Q  614 cgcattgcctagagatatgg----gct-gtgtagtgtttgtaaa-gctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaac 707  Q
    |  |||||||||||||||||    ||| |||| |||||| |||| ||  ||||| ||| | |||||||||||| | || ||||||||| |||||| ||||    
T  21048806 catattgcctagagatatggcatggcttgtgtggtgtttataaaagcctgggcaacccgcaccttacaagccaattttataaggttgagttaggctcaac 21048707  T
Q  708 ccaaattctaaga 720  Q
    |||||||||||||    
T  21048706 ccaaattctaaga 21048694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 577 - 720
Target Start/End: Original strand, 41387506 - 41387649
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||| ||| ||||||  |   ||||||||| |||||||| || |||||  || ||||||| || ||||  | ||| |||| || ||||||||    
T  41387506 cttcattgtgttaggtatgaaggggtgggtttagtcccacattgccttgacatatgaactatgtagtgcttataaaatttgggtagccttcaccttacaa 41387605  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    ||| ||  ||||||||| |||||| |||||| ||||||||||||    
T  41387606 gcctgttctgtaaggtttaattagacccaacacaaattctaaga 41387649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 41389282 - 41389360
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagct 655  Q
    |||||||||||| ||||||||||  |  |||||||||| |||||| ||||||||| | ||||||||| ||| |||||||    
T  41389282 cttcattgtgttaggtgtgaaggggtggatttagtcccacattgcttagagatatagcctgtgtagtatttataaagct 41389360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 666
Target Start/End: Original strand, 28359092 - 28359149
Alignment:
Q  609 agtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccct 666  Q
    |||||| |||||||||||||||| | ||||||||||||| ||||||  ||||||||||    
T  28359092 agtcccacattgcctagagatatagcctgtgtagtgtttataaagcaagggcagccct 28359149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 706
Target Start/End: Complemental strand, 30899090 - 30898989
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccc 704  Q
    |||||||||| |||||| |||||||| |   |||||||||| | ||||||| |||||||||||  |||||||||| || || || || ||| ||||||||    
T  30899090 atttagtcccacattgcttagagataggtcatgtgtagtgtatataaagcttgggcagccctcatcttacaagccggttttttacggatgagttaggccc 30898991  T
Q  705 aa 706  Q
    ||    
T  30898990 aa 30898989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 717
Target Start/End: Original strand, 39164690 - 39164743
Alignment:
Q  664 cctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattcta 717  Q
    |||| |||||||| ||||| || ||||||||| |||||||||||||||||||||    
T  39164690 cctcaccttacaaaccagttttataaggttgagttaggcccaacccaaattcta 39164743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 515 - 582
Target Start/End: Complemental strand, 39079841 - 39079773
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccgccc-tagccgcctaattgcggcatttgggttgtcttcat 582  Q
    |||||||||||| |||||||||| || | |||| |||||  |||||||||||||||| |||||||||||    
T  39079841 tgttgaaaatttcgccttcattgcggtctgcccctagccatctaattgcggcatttgagttgtcttcat 39079773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 584
Target Start/End: Complemental strand, 12840753 - 12840714
Alignment:
Q  545 ccctagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  12840753 ccctagcctcctaattgcggcatttgggttgttttcattg 12840714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 584
Target Start/End: Original strand, 23721066 - 23721105
Alignment:
Q  545 ccctagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  23721066 ccctagccacctaattgcggcatttgggttgccttcattg 23721105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 712
Target Start/End: Original strand, 27820914 - 27820957
Alignment:
Q  669 ccttacaagccagtcttgtaaggttgaattaggcccaacccaaa 712  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||    
T  27820914 ccttacaagccagttttgtaaggttgagttaggccgaacccaaa 27820957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 513 - 566
Target Start/End: Original strand, 32000709 - 32000763
Alignment:
Q  513 attgttgaaaattttgccttcattgtggaccgccc-tagccgcctaattgcggca 566  Q
    |||||||||||||  ||||| ||||||| |||||| |||||||||||||||||||    
T  32000709 attgttgaaaattccgccttgattgtggtccgcccttagccgcctaattgcggca 32000763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 655
Target Start/End: Complemental strand, 12840671 - 12840622
Alignment:
Q  606 tttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagct 655  Q
    |||||| || ||||||||||||||||||  |||||||||||| |||||||    
T  12840671 tttagttccacattgcctagagatatggcttgtgtagtgtttataaagct 12840622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 577 - 718
Target Start/End: Original strand, 30590424 - 30590565
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||| ||||||||||  |  |||||||||| |||||| |||| ||||||  |||||||||||| ||||||| ||||||||||| ||||||||    
T  30590424 cttcattgtgtttggtgtgaaggggtggatttagtcccacattgcatagatatatggcatgtgtagtgtttataaagcttgggcagccctcaccttacaa 30590523  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaa 718  Q
    ||| || |||||||||||| ||||||| | ||||||||||||    
T  30590524 gccggttttgtaaggttgacttaggcctagcccaaattctaa 30590565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 577 - 703
Target Start/End: Original strand, 39590674 - 39590799
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||||| ||||||||  |  || |||||| ||||||| ||||||||||| |||| |||||||| ||||||  ||||||||||| ||||||||    
T  39590674 cttcattgtgttgg-tgtgaaggggtggatatagtccagcattgcttagagatatggcctgtctagtgtttataaagcatgggcagccctcaccttacaa 39590772  T
Q  677 gccagtcttgtaaggttgaattaggcc 703  Q
     ||||| |||||||| ||| |||||||    
T  39590773 accagttttgtaaggatgatttaggcc 39590799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 605 - 721
Target Start/End: Original strand, 26642591 - 26642707
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccc 704  Q
    ||||||| || |||||||||||||||||   |||||||||||| ||||  |   | |||| || ||||||||||| || | |||||||||| ||||||||    
T  26642591 atttagttccacattgcctagagatatgacatgtgtagtgtttataaattttaagaagccttcaccttacaagccggtttggtaaggttgatttaggccc 26642690  T
Q  705 aacccaaattctaagag 721  Q
    |||||||||||||||||    
T  26642691 aacccaaattctaagag 26642707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 644
Target Start/End: Complemental strand, 16213295 - 16213197
Alignment:
Q  546 cctagccgcctaattgcggcatttgggttgtcttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtg 644  Q
    ||||||||||||||||| |||  ||||| | |||||||||||||| ||||||||  |  |||||||| | || ||||||||||||||| || |||||||    
T  16213295 cctagccgcctaattgcagcaagtgggtcgccttcattgtgttggatgtgaaggggtggatttagtctcacactgcctagagatatggcctatgtagtg 16213197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 577 - 700
Target Start/End: Original strand, 34529963 - 34530086
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||||||||| ||||     |||||||||| |||||  ||||| ||||| ||||||||||||| ||||||| ||||| || || ||| ||||    
T  34529963 cttcattgtgttgggtgtaaaggggcggatttagtcccacattgattagaggtatggtctgtgtagtgtttataaagcttgggcatccgtcacctcacaa 34530062  T
Q  677 gccagtcttgtaaggttgaattag 700  Q
    ||  || |||||||| ||| ||||    
T  34530063 gcttgttttgtaaggatgagttag 34530086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 32977273 - 32977315
Alignment:
Q  259 gttcattattgcttattgtgttatgtagaattgtgcattgtgg 301  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  32977273 gttcattattgcttattgtgttatgtagaatcgtgcactgtgg 32977315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 38887077 - 38887155
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagct 655  Q
    |||||||||||||||||||||||  |  ||||| |||| |||||||||||||||||  || ||||||| || |||||||    
T  38887077 cttcattgtgttgggtgtgaaggggttgatttaatcccacattgcctagagatatgacctatgtagtgcttataaagct 38887155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 701
Target Start/End: Original strand, 30602843 - 30602997
Alignment:
Q  545 ccctagccgcctaattgcggcatttgggttgtcttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtg 644  Q
    |||||| | |||||||||||| ||| ||||| ||||| ||| |||||| |||||||    |||||| ||| |||||| ||||||| |||  |||||||||    
T  30602843 ccctagtcccctaattgcggcttttaggttgccttcactgtattgggtttgaaggtgg--atttagacccacattgcttagagatgtggcatgtgtagtg 30602940  T
Q  645 tttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattagg 701  Q
    ||| |||| |  |||||||| || |||||||  || || |||||||| ||| |||||    
T  30602941 tttataaaacatgggcagccttccccttacacaccggttttgtaaggatgagttagg 30602997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 718
Target Start/End: Complemental strand, 30966130 - 30966069
Alignment:
Q  657 gggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaa 718  Q
    |||||| |||| ||||||||||| || ||||||  |||| ||||||||||||||||||||||    
T  30966130 gggcagtcctcaccttacaagccggttttgtaaatttgagttaggcccaacccaaattctaa 30966069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 637 - 701
Target Start/End: Complemental strand, 18900825 - 18900761
Alignment:
Q  637 gtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattagg 701  Q
    ||||||||||| ||||||| ||||| ||||| ||||||||| |||| | |||||||||| |||||    
T  18900825 gtgtagtgtttataaagcttgggcatccctcgccttacaagtcagtttagtaaggttgagttagg 18900761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 32977362 - 32977398
Alignment:
Q  393 ataatttgaatcataatttctttgaaattttagccac 429  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32977362 ataatttgcatcataatttctttgaaattttagccac 32977398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 580
Target Start/End: Original strand, 38887024 - 38887059
Alignment:
Q  545 ccctagccgcctaattgcggcatttgggttgtcttc 580  Q
    ||||||||||||||||||||||||||||||| ||||    
T  38887024 ccctagccgcctaattgcggcatttgggttgccttc 38887059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 545 - 583
Target Start/End: Original strand, 34529910 - 34529948
Alignment:
Q  545 ccctagccgcctaattgcggcatttgggttgtcttcatt 583  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  34529910 ccctggccgcctaattgcggcatttgggttgccttcatt 34529948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 669 - 715
Target Start/End: Original strand, 34621955 - 34622001
Alignment:
Q  669 ccttacaagccagtcttgtaaggttgaattaggcccaacccaaattc 715  Q
    ||||||||||| || |||||||| ||| |||||||||||||||||||    
T  34621955 ccttacaagccggtgttgtaaggctgagttaggcccaacccaaattc 34622001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 7e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 577 - 720
Target Start/End: Complemental strand, 1206307 - 1206164
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||||||||||||||  | ||||||||||| |||| ||||||||||||  ||||||||||||| |||||||  |||||||||| ||||||||    
T  1206307 cttcattgtgttgggtgtgaagggatgaatttagtcccacatttcctagagatatgtcctgtgtagtgtttataaagcttaggcagccctcaccttacaa 1206208  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    ||  |  |||||||| | | ||||| ||||||||||||||||||    
T  1206207 gctggatttgtaaggctaagttaggtccaacccaaattctaaga 1206164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 577 - 719
Target Start/End: Complemental strand, 1205992 - 1205850
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttg-taaagctcgggcagccctctccttaca 675  Q
    |||||| ||||| ||||||||||  |  |||||||||  || ||| ||||||||||| || ||||||||||  |||| || ||||||| ||| | |||||    
T  1205992 cttcatcgtgttaggtgtgaaggggtggatttagtccatcaatgcttagagatatggcct-tgtagtgttttataaaacttgggcagcactcgcattaca 1205894  T
Q  676 agccagtcttgtaaggttgaattaggcccaacccaaattctaag 719  Q
    |||| ||||||||||||||| ||||  |||||||||||||||||    
T  1205893 agccggtcttgtaaggttgagttagctccaacccaaattctaag 1205850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 515 - 584
Target Start/End: Complemental strand, 1206076 - 1206006
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccgccc-tagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    ||||| ||||| ||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||||    
T  1206076 tgttggaaattctgccttcattgcggtccgcccctagccgcctaattgcggcatttgggttgccttcattg 1206006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 584 - 693
Target Start/End: Original strand, 18286869 - 18286977
Alignment:
Q  584 gtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtc 683  Q
    ||||||||||||||||  |  |||||||||| |||| ||||||||||||| || ||||||| || ||||||| ||| ||| ||| |||||||| || ||     
T  18286869 gtgttgggtgtgaaggggttgatttagtcccacatttcctagagatatggcctatgtagtg-ttataaagcttggggagcactcgccttacaaaccggtt 18286967  T
Q  684 ttgtaaggtt 693  Q
    ||||||||||    
T  18286968 ttgtaaggtt 18286977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 720
Target Start/End: Complemental strand, 130734 - 130671
Alignment:
Q  657 gggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||||||| || |||||||||||||| ||| |||||||| |||||| |||||  ||||||||||    
T  130734 gggcagccatcgccttacaagccagttttgcaaggttgagttaggctcaaccagaattctaaga 130671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 30705277 - 30705248
Alignment:
Q  393 ataatttgaatcataatttctttgaaattt 422  Q
    ||||||||||||||||||||||||||||||    
T  30705277 ataatttgaatcataatttctttgaaattt 30705248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 577 - 719
Target Start/End: Original strand, 16275217 - 16275359
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||||| ||| ||||  |  |||||||||| |||||||||||||||||| ||||||||||| ||||||| | ||||||||||| ||||||||    
T  16275217 cttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtgtaaagtttgggcagccctcaccttacaa 16275316  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaag 719  Q
    |   || |||||||||||| |||| |||| |||||||||||||    
T  16275317 ggtggttttgtaaggttgagttagacccagcccaaattctaag 16275359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 577 - 706
Target Start/End: Original strand, 4796334 - 4796463
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||||||||||||||  |  |||||||| | |||||| |||||||||||  |||||||||||| ||||||  ||||||||||| ||||||||    
T  4796334 cttcattgtgttgggtgtgaaggggtggatttagtcacacattgcttagagatatggcatgtgtagtgtttataaagcatgggcagccctcaccttacaa 4796433  T
Q  677 gccagtcttgtaaggttgaattaggcccaa 706  Q
    ||  || |||||||| ||| ||||||||||    
T  4796434 gcgggttttgtaaggatgagttaggcccaa 4796463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 577 - 720
Target Start/End: Complemental strand, 31973562 - 31973423
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    ||||||||||||||||||||| |  |  |||||||||| ||||| |||||||||||| || |||||||||| ||||| | ||||||||||| ||| |||     
T  31973562 cttcattgtgttgggtgtgaaagggtggatttagtcccacattgtctagagatatggcctatgtagtgtttataaagtttgggcagccctcacctcacac 31973463  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    ||  || |||||||||    ||| ||||||||||||||||||||    
T  31973462 gctggttttgtaaggt----ttatgcccaacccaaattctaaga 31973423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 712
Target Start/End: Complemental strand, 15844352 - 15844220
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    ||||||||||||| |||||||||  |  |||||||||| |||| ||||||||||| | | |||| ||| || ||||| | ||| ||||||| || |||||    
T  15844352 cttcattgtgttgagtgtgaaggggtggatttagtcccacatttcctagagatat-gacagtgttgtgcttataaagtttgggaagccctcaccatacaa 15844254  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaa 712  Q
    ||| || ||||||||||  ||||| |||||||||||    
T  15844253 gccggttttgtaaggtt--attagacccaacccaaa 15844220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 721
Target Start/End: Complemental strand, 31973194 - 31973134
Alignment:
Q  661 agccctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaagag 721  Q
    ||||||| ||||||| ||| || |||||||||| | |||||||||||||||||||||||||    
T  31973194 agccctcaccttacatgccggttttgtaaggttcagttaggcccaacccaaattctaagag 31973134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 720
Target Start/End: Original strand, 35661037 - 35661092
Alignment:
Q  664 cctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||| ||||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  35661037 cctcgccttacaagcc-gttttgtaaggttgaattaggcccaaccaaaattctaaga 35661092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 720
Target Start/End: Original strand, 30366670 - 30366731
Alignment:
Q  659 gcagccctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||| |||| ||||||||||| |  |||||||||||| |||||||||| |||||||||||||    
T  30366670 gcagtcctcaccttacaagccggctttgtaaggttgagttaggcccaaaccaaattctaaga 30366731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 720
Target Start/End: Complemental strand, 15844566 - 15844510
Alignment:
Q  664 cctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||| |||||| ||||||| ||||||| |||| |||||||||||||||||| |||||    
T  15844566 cctcaccttactagccagttttgtaagattgagttaggcccaacccaaattttaaga 15844510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 845
Target Start/End: Complemental strand, 21954617 - 21954523
Alignment:
Q  751 ttagaaataggtagagagcactagccctctgcaaagaggttgctccgtggttgaggaaccaattcctcagtaaatcctcgtttgaattcaataat 845  Q
    |||||||| ||||| | ||| |||| |||||| | ||| |||||| |||| || ||||||| |||||| ||||| |||  |||||||||||||||    
T  21954617 ttagaaatgggtagtgtgcattagctctctgcgaggagcttgctctgtggctggggaaccatttcctccgtaaaccctaatttgaattcaataat 21954523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 584
Target Start/End: Complemental strand, 31973337 - 31973267
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccgccct-agccgcctaattgcggcatttgggttgtcttcattg 584  Q
    ||||| ||||| |||||||||||  | ||||||  ||||||||||||||||||||||||||  ||||||||    
T  31973337 tgttggaaattctgccttcattgcagtccgcccccagccgcctaattgcggcatttgggtttccttcattg 31973267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 672 - 718
Target Start/End: Original strand, 32337537 - 32337583
Alignment:
Q  672 tacaagccagtcttgtaaggttgaattaggcccaacccaaattctaa 718  Q
    |||||||| || ||||| ||||| |||||||||||||||||||||||    
T  32337537 tacaagccggttttgtagggttgtattaggcccaacccaaattctaa 32337583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 706
Target Start/End: Complemental strand, 904853 - 904752
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccc 704  Q
    |||||||||| ||||||  | | ||||||  |||||||||||| |||| || | ||| ||||| ||||||||||| || |||||||| ||| | ||||||    
T  904853 atttagtcccacattgctaacatatatggcttgtgtagtgtttataaaacttgagcatccctcaccttacaagccggttttgtaaggatgagtcaggccc 904754  T
Q  705 aa 706  Q
    ||    
T  904753 aa 904752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 575
Target Start/End: Complemental strand, 904970 - 904909
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccg-ccctagccgcctaattgcggcatttgggttg 575  Q
    ||||| ||||| |||||||||||||| ||| ||||| |||| ||||||||||||||| ||||    
T  904970 tgttggaaattctgccttcattgtggtccgcccctatccgcttaattgcggcatttgagttg 904909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 721
Target Start/End: Complemental strand, 22199022 - 22198985
Alignment:
Q  684 ttgtaaggttgaattaggcccaacccaaattctaagag 721  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  22199022 ttgtaaggttgagttaggcccaacccaaattttaagag 22198985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 690
Target Start/End: Complemental strand, 38604007 - 38603927
Alignment:
Q  609 agtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaag 690  Q
    |||||| |||||| || ||||||||  |||||||||||| ||||||| ||||| ||||| |||||||| || || |||||||    
T  38604007 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcaccttacaaaccggttttgtaag 38603927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 577 - 720
Target Start/End: Complemental strand, 19811139 - 19810996
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||| ||||||||||||||||| | |  |||||||||| | |||||||||||||||| |||| |||||||| || |||| ||||| ||||  ||||||||    
T  19811139 cttcgttgtgttgggtgtgaagatgtggatttagtcccacgttgcctagagatatggcctgtttagtgtttttatagcttgggcaacccttgccttacaa 19811040  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    ||| || |||||||||||| ||||||| |||||||||| |||||    
T  19811039 gccggttttgtaaggttgacttaggccgaacccaaattttaaga 19810996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 607 - 712
Target Start/End: Complemental strand, 19810056 - 19809951
Alignment:
Q  607 ttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaa 706  Q
    |||||||| ||||||||||| |||||| ||||||| ||||| ||||||| |||||||| || |||||||||||  | |||||||||||| ||||||||||    
T  19810056 ttagtcccacattgcctagatatatggtctgtgtaatgtttataaagcttgggcagccttcaccttacaagccgattttgtaaggttgagttaggcccaa 19809957  T
Q  707 cccaaa 712  Q
    ||||||    
T  19809956 cccaaa 19809951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 577 - 720
Target Start/End: Complemental strand, 34626902 - 34626759
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    ||||||| |||||||||||||||  |  |||||||| | |||| || ||||||||||  |||||||||||| ||||||| ||||||||||| ||||||||    
T  34626902 cttcattctgttgggtgtgaaggagtggatttagtctcacatttcccagagatatggcatgtgtagtgtttataaagcttgggcagccctcaccttacaa 34626803  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||  |  |||||| || | | ||| ||||||||||||||||||    
T  34626802 gccgattctgtaagattaagtaaggaccaacccaaattctaaga 34626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 604 - 720
Target Start/End: Complemental strand, 17557822 - 17557708
Alignment:
Q  604 aatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcc 703  Q
    |||||| |||| |||||||||||||||||    ||||||||||| |||||||  |||| ||||| ||||||||||   | |||||||||||| |||||||    
T  17557822 aatttaatcccacattgcctagagatatgac--gtgtagtgtttataaagcttaggcaaccctcaccttacaagctgattttgtaaggttgagttaggcc 17557725  T
Q  704 caacccaaattctaaga 720  Q
    |||||||||||||||||    
T  17557724 caacccaaattctaaga 17557708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 608 - 720
Target Start/End: Complemental strand, 19810795 - 19810683
Alignment:
Q  608 tagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaac 707  Q
    ||||||| |||||||||||||||||| ||||| | ||||| ||||||| ||||| || || ||||| |||||  | ||||||||||||  ||||||||||    
T  19810795 tagtcccacattgcctagagatatggcctgtgcaatgtttataaagcttgggcaaccttcaccttagaagccgattttgtaaggttgagctaggcccaac 19810696  T
Q  708 ccaaattctaaga 720  Q
    ||||||| |||||    
T  19810695 ccaaattttaaga 19810683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 577 - 720
Target Start/End: Complemental strand, 41590660 - 41590525
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||||||||||| ||  | ||||||||||| |||||||||||||||||  |       ||||| ||||||| ||||| |||||  |||||||    
T  41590660 cttcattgtgttgggtgtgagggggtgaatttagtcccacattgcctagagatatgacc-------tgtttataaagcttgggcaaccctcatcttacaa 41590568  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    ||| || | |||||||||| ||||| ||||||||||||||||||    
T  41590567 gccggtttcgtaaggttgagttagg-ccaacccaaattctaaga 41590525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 577 - 720
Target Start/End: Complemental strand, 41590356 - 41590214
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    ||||||||||| |||||||||||  |   |||||| || |||| |||||| |||||| ||||||||||||  ||||||| || || |||||  |||||||    
T  41590356 cttcattgtgtcgggtgtgaaggggtgggtttagttccacatttcctagaaatatggtctgtgtagtgtta-taaagcttggtcaaccctcatcttacaa 41590258  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    ||  || |||||||||||| || ||||||||| |||||||||||    
T  41590257 gctggttttgtaaggttgagtttggcccaacctaaattctaaga 41590214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 635 - 720
Target Start/End: Original strand, 7525021 - 7525106
Alignment:
Q  635 ctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    ||||||||||||| | ||| | ||||||||||| ||||||||||  || |||||||||||| |||||| ||| |||||||||||||    
T  7525021 ctgtgtagtgtttatgaagtttgggcagccctcaccttacaagctggttttgtaaggttgagttaggctcaatccaaattctaaga 7525106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 578 - 695
Target Start/End: Original strand, 18998370 - 18998488
Alignment:
Q  578 ttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaag 677  Q
    ||||||||||||||||||||||     | |||||| | |||||||||||||||| |  | |||||||||| ||||||| | ||||||||| |||||||||    
T  18998370 ttcattgtgttgggtgtgaaggggcagacttagtctcacattgcctagagatattgcttttgtagtgtttataaagcttgagcagccctcaccttacaag 18998469  T
Q  678 ccag-tcttgtaaggttga 695  Q
    || | | ||||||||||||    
T  18998470 ccggtttttgtaaggttga 18998488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 647
Target Start/End: Complemental strand, 40566394 - 40566324
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgttt 647  Q
    |||||||||||||||||||||||  |  ||| ||||||  ||||||||| ||||||| |||||||||||||    
T  40566394 cttcattgtgttgggtgtgaagggatggattcagtcccatattgcctagcgatatggcctgtgtagtgttt 40566324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 711
Target Start/End: Original strand, 10239500 - 10239541
Alignment:
Q  670 cttacaagccagtcttgtaaggttgaattaggcccaacccaa 711  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  10239500 cttacaagccagttttgtaaggttgagttaggcccaacccaa 10239541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 669 - 721
Target Start/End: Original strand, 347339 - 347391
Alignment:
Q  669 ccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaagag 721  Q
    ||||| |||||||| |||||||||||| |||||  ||||||||||||||||||    
T  347339 ccttagaagccagttttgtaaggttgagttaggttcaacccaaattctaagag 347391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 720
Target Start/End: Complemental strand, 19609229 - 19609169
Alignment:
Q  661 agccctctccttacaagccagtcttgtaaggttgaattaggcccaaccc-aaattctaaga 720  Q
    ||||||| ||||||||||| || |||||||||||| |||||| |||||| |||||||||||    
T  19609229 agccctcaccttacaagccggttttgtaaggttgagttaggctcaacccaaaattctaaga 19609169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 584
Target Start/End: Complemental strand, 19810903 - 19810839
Alignment:
Q  521 aaattttgccttcattgtggaccgccc-tagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    ||||| |||||| ||||||| || ||| |||| ||||||||||||||||||||||| ||||||||    
T  19810903 aaattctgccttaattgtggtccacccctagctgcctaattgcggcatttgggttggcttcattg 19810839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 577 - 641
Target Start/End: Complemental strand, 51188942 - 51188878
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgta 641  Q
    |||||||||||||||| ||||||  |  |||||||||| |||||| ||||||||||| |||||||    
T  51188942 cttcattgtgttgggtttgaaggggtggatttagtcccacattgcttagagatatggcctgtgta 51188878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 584
Target Start/End: Complemental strand, 7908026 - 7907987
Alignment:
Q  545 ccctagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  7908026 ccctagccgcctaattgtggcatttgggttgccttcattg 7907987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 707
Target Start/End: Original strand, 12410381 - 12410512
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcc-tagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttaca 675  Q
    |||||| ||||||||||||||||  |  |||||||||| ||||  | ||||||||||| || ||||||| || ||||| | |||||||| || |||||||    
T  12410381 cttcatcgtgttgggtgtgaaggagttgatttagtcccacattttcatagagatatggcctatgtagtgcttataaagtttgggcagccttcaccttaca 12410480  T
Q  676 agccagtcttgtaaggttgaattaggcccaac 707  Q
    |    || |||||||||||  |||||||||||    
T  12410481 aagtggttttgtaaggttgggttaggcccaac 12410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 409 - 443
Target Start/End: Complemental strand, 13203664 - 13203630
Alignment:
Q  409 tttctttgaaattttagccacaccaatatcgaaag 443  Q
    |||||| ||||||||||||||||||||||||||||    
T  13203664 tttcttcgaaattttagccacaccaatatcgaaag 13203630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 584
Target Start/End: Complemental strand, 41590439 - 41590370
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccgc-cctagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    |||||||||||  |||||||||| || |||| ||||||||||||||||||| | |||||||| ||||||||    
T  41590439 tgttgaaaattccgccttcattgcggtccgcacctagccgcctaattgcgg-aattgggttgccttcattg 41590370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 718
Target Start/End: Original strand, 347111 - 347160
Alignment:
Q  669 ccttacaagccagtcttgtaaggttgaattaggcccaacccaaattctaa 718  Q
    ||||||||||  || |||||||||||| ||||| ||||||||||||||||    
T  347111 ccttacaagctggttttgtaaggttgagttagggccaacccaaattctaa 347160  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 715
Target Start/End: Original strand, 18998693 - 18998825
Alignment:
Q  583 tgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagt 682  Q
    ||||||||||||||| |  |  |||||||||| |||||||||||||||||  || |||||||| | ||||||| | |||| | || ||||||||||  ||    
T  18998693 tgtgttgggtgtgaaagggtggatttagtcccacattgcctagagatatgacctatgtagtgtatataaagcttgagcagtcatc-ccttacaagctggt 18998791  T
Q  683 cttgt-aaggttgaattaggcccaacccaaattc 715  Q
      ||| |||||||| |||| | ||||||||||||    
T  18998792 tatgtaaaggttgagttagtcacaacccaaattc 18998825  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 721
Target Start/End: Complemental strand, 21641441 - 21641404
Alignment:
Q  684 ttgtaaggttgaattaggcccaacccaaattctaagag 721  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  21641441 ttgtaaggttgagttaggcccaacccaaattttaagag 21641404  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 581 - 708
Target Start/End: Complemental strand, 26942995 - 26942869
Alignment:
Q  581 attgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagcca 680  Q
    ||||||||||||||||||   | ||||||||| | ||| |||||||||||||| ||||||||||||| |||||||  |||| ||||| |||||||||||     
T  26942995 attgtgttgggtgtgaagaggtgaatttagtctcacat-gcctagagatatggtctgtgtagtgtttataaagcttaggcacccctcaccttacaagccg 26942897  T
Q  681 gtcttgtaaggttgaattaggcccaacc 708  Q
     | |||||||| ||| ||||||||||||    
T  26942896 attttgtaaggatgagttaggcccaacc 26942869  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 605 - 706
Target Start/End: Original strand, 48046361 - 48046462
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccc 704  Q
    |||||||||| ||||||||||||||||||  ||||||||||||  |||| | |||| |||||| ||||||||||| || |||||| ||||| ||||||||    
T  48046361 atttagtcccacattgcctagagatatggcatgtgtagtgtttacaaagtttgggccgccctcaccttacaagccggttttgtaacgttgagttaggccc 48046460  T
Q  705 aa 706  Q
    ||    
T  48046461 aa 48046462  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 577 - 712
Target Start/End: Complemental strand, 54595505 - 54595370
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    |||||||||||||| ||||||||  |  | ||| |||| | ||||||||||| | ||  ||||||||| || ||||||||||||||||||| ||||||||    
T  54595505 cttcattgtgttggttgtgaagggatggaattaatcccacgttgcctagagacacggcttgtgtagtgcttttaaagctcgggcagccctcaccttacaa 54595406  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaa 712  Q
    || ||| |||  ||||||| ||| ||||||||||||    
T  54595405 gcaagttttgcgaggttgagttaagcccaacccaaa 54595370  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 577 - 720
Target Start/End: Complemental strand, 30491079 - 30490939
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    ||||| |||||||||||||||||  |  |||||||||  ||||||||||| |||||| |||||  |||||| |||||   ||| | ||||| ||||||||    
T  30491079 cttcaatgtgttgggtgtgaaggggtggatttagtcca-cattgcctagatatatggcctgtg--gtgtttataaagtctgggaacccctcaccttacaa 30490983  T
Q  677 gccagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||  | | |||||||||| ||||||||||||||||||||||||    
T  30490982 gccgttttcgtaaggttgagttaggcccaacccaaattctaaga 30490939  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 577 - 720
Target Start/End: Complemental strand, 52043206 - 52043062
Alignment:
Q  577 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaa 676  Q
    ||||||||| | |||||||||||  |  |||||||| | ||||||| | |||||||| |||| |||||||| |||||||   ||||||||| ||||||||    
T  52043206 cttcattgtatcgggtgtgaaggggtggatttagtctcacattgccaaaagatatggtctgtttagtgtttataaagcttatgcagccctcaccttacaa 52043107  T
Q  677 gccagtcttgtaaggttgaattaggcccaaccc-aaattctaaga 720  Q
    ||| || || ||| ||||| ||| ||||||||| |||||||||||    
T  52043106 gccggttttataaagttgagttaagcccaacccaaaattctaaga 52043062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 706
Target Start/End: Complemental strand, 23311592 - 23311469
Alignment:
Q  583 tgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagt 682  Q
    |||||||||| ||||||  |  |||||||||  |||||  |||||||||||  |||||||||||| ||||||  |||||||| |  ||||||||||| ||    
T  23311592 tgtgttgggtttgaaggggtggatttagtcctacattgtttagagatatggcatgtgtagtgtttataaagcgtgggcagcctttaccttacaagccggt 23311493  T
Q  683 cttgtaaggttgaattaggcccaa 706  Q
     |||||||| ||| ||||||||||    
T  23311492 tttgtaaggatgacttaggcccaa 23311469  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 720
Target Start/End: Complemental strand, 3137734 - 3137621
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccc 704  Q
    |||||||||  |||| ||||||||||||| || |||||||| |  |||||| | ||||||||| |||| |||||| || || || ||| || ||||| ||    
T  3137734 atttagtccgacattccctagagatatggcctatgtagtgtat--aaagcttgtgcagccctcaccttgcaagccggttttttatggtcgagttaggtcc 3137637  T
Q  705 aacccaaattctaaga 720  Q
    ||||||||||||||||    
T  3137636 aacccaaattctaaga 3137621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 605 - 720
Target Start/End: Complemental strand, 3137044 - 3136930
Alignment:
Q  605 atttagtcccgcattgcctagagatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttacaagccagtcttgtaaggttgaattaggccc 704  Q
    |||||||||| ||||||||||||| |||| || || ||||||| || |||| ||  | ||||| ||||||||||| || ||||| |||||| | ||| ||    
T  3137044 atttagtcccacattgcctagaga-atggcctatgcagtgtttatatagcttggagaaccctcaccttacaagccggtgttgtagggttgagtcaggtcc 3136946  T
Q  705 aacccaaattctaaga 720  Q
    |||||| |||||||||    
T  3136945 aacccatattctaaga 3136930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 521 - 584
Target Start/End: Complemental strand, 46332740 - 46332675
Alignment:
Q  521 aaattttgccttcattgtggaccgccct--agccgcctaattgcggcatttgggttgtcttcattg 584  Q
    |||||| |||||||||| || ||||||   ||||||||||||||||||||||||||| ||||||||    
T  46332740 aaatttcgccttcattgcggtccgcccctaagccgcctaattgcggcatttgggttgccttcattg 46332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 35390461 - 35390416
Alignment:
Q  393 ataatttgaatcataatttctttgaaattttagccacaccaatatc 438  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||    
T  35390461 ataatttacatcataatttctttgaaattttagccacactaatatc 35390416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 37514447 - 37514410
Alignment:
Q  259 gttcattattgcttattgtgttatgtagaattgtgcat 296  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  37514447 gttcattattgtttattgtgttatgtagaattgtgcat 37514410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 18194781 - 18194746
Alignment:
Q  403 tcataatttctttgaaattttagccacaccaatatc 438  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18194781 tcatagtttctttgaaattttagccacaccaatatc 18194746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 584
Target Start/End: Complemental strand, 26942768 - 26942729
Alignment:
Q  545 ccctagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  26942768 ccctagccacctaattgcggtatttgggttgtcttcattg 26942729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 584
Target Start/End: Original strand, 48046201 - 48046271
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccgccc-tagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    ||||| |||||| |||||||||| || | |||| ||||||||||||||  ||||||||| |||||||||||    
T  48046201 tgttggaaatttcgccttcattgcggtctgcccctagccgcctaattgtagcatttgggctgtcttcattg 48046271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 718
Target Start/End: Complemental strand, 50830738 - 50830704
Alignment:
Q  684 ttgtaaggttgaattaggcccaacccaaattctaa 718  Q
    |||||||||||| ||||||||||||||||||||||    
T  50830738 ttgtaaggttgagttaggcccaacccaaattctaa 50830704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 584
Target Start/End: Complemental strand, 54595273 - 54595203
Alignment:
Q  515 tgttgaaaattttgccttcattgtggaccg-ccctagccgcctaattgcggcatttgggttgtcttcattg 584  Q
    ||||| |||||  |||||||||| |||||| ||||||| |||||||||||||||||  |||| ||||||||    
T  54595273 tgttggaaattccgccttcattgcggaccgtccctagctgcctaattgcggcatttaagttgccttcattg 54595203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 720
Target Start/End: Original strand, 24001540 - 24001581
Alignment:
Q  679 cagtcttgtaaggttgaattaggcccaacccaaattctaaga 720  Q
    |||| |||||||||||| ||| ||||||||||||||||||||    
T  24001540 cagttttgtaaggttgagttaagcccaacccaaattctaaga 24001581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 286265 - 286300
Alignment:
Q  403 tcataatttctttgaaattttagccacaccaatatc 438  Q
    ||||| ||||||||||||||||||||||||||||||    
T  286265 tcatagtttctttgaaattttagccacaccaatatc 286300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 292621 - 292656
Alignment:
Q  403 tcataatttctttgaaattttagccacaccaatatc 438  Q
    ||||| ||||||||||||||||||||||||||||||    
T  292621 tcatagtttctttgaaattttagccacaccaatatc 292656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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