View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_20 (Length: 436)
Name: NF6019_low_20
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 22044941 - 22045357
Alignment:
| Q |
1 |
tagggaaaagtactatctaggataaaatgattataagttatctaagtttacatagatagtaaattaattgagagagaagttagcaagcataagattcctg |
100 |
Q |
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|||||||||||||||| ||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
22044941 |
tagggaaaagtactatgtagaataa--tgattataagttagctaagtttacatacatagtaaattaattgagaaagaaattagcaagcataagattcctg |
22045038 |
T |
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| Q |
101 |
taacatactttcaatggtggtagatttaataatgagtgtgctagagtgtaagagtatagtaaataatatcttggatttggagaatatgaatgaaagaact |
200 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22045039 |
taatatactttcaatggtcatagatttaataatgagtgtgctagagtgtaagagtatagtaaattgtatcttggatttggagaatatgaatgaaagaact |
22045138 |
T |
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| Q |
201 |
tagattgattgatagtgataatggaatcaagaaattgtcttggacttgcttaatcatcaatattgatgctttgaaaattttgtttacatattttctaaga |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22045139 |
tagattgattgatagtcataatggaatcaagaaattgtcttggacttgtttaatcatcaatattgatactttgaaaattttgtttacatattttctaaga |
22045238 |
T |
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| Q |
301 |
aattgcaaattaacc--tataaagaaaataagagatggtttgtttannnnnnnnnnagtgaatttatgtatttacattagaaacgttaatattattttgc |
398 |
Q |
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||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
22045239 |
aattgcatattaacctatataaagaaaataagagatggtttattt--tatttttttagtgaatttatgtatttacattagaaacattattattattttgc |
22045336 |
T |
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| Q |
399 |
tttgatatacaaatggaaaga |
419 |
Q |
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||||||||||||||||||||| |
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| T |
22045337 |
tttgatatacaaatggaaaga |
22045357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 31773908 - 31774050
Alignment:
| Q |
90 |
taagattcctgtaacatactttcaatggtggtagatttaataatgagtgtgctagagtgtaagagtatagt---aaataatatcttggatttggagaata |
186 |
Q |
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|||||||||| ||||||||| |||||| |||| |||||||||| |||| |||||||||||| ||||| ||| |||| |||||||||||||||| |
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| T |
31773908 |
taagattcctccgacatactttgaatggtcatagagttaataatgaatgtgttagagtgtaaga--atagtgaaaaaaaatagattggatttggagaata |
31774005 |
T |
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| Q |
187 |
tgaatgaaagaacttagattgattgatagtgataatggaatcaag |
231 |
Q |
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| T |
31774006 |
tgaatcaaataacttagattgattgatagtgataatggaatcaag |
31774050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 344
Target Start/End: Original strand, 31774098 - 31774191
Alignment:
| Q |
251 |
taatcatcaatattgatgctttgaaaattttgtttacatattttctaagaaattgcaaattaacctataaagaaaataagagatggtttgttta |
344 |
Q |
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| T |
31774098 |
taatcatcaacagtgatgcattgaaaattttgtgtaaaaattgtataagaaattataaataaacctataaagacaataagagatggtttgttta |
31774191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 22044763 - 22044828
Alignment:
| Q |
85 |
aagcataagattcctgtaacatactttcaatggtggtagatttaataatgagtgtgctagagtgta |
150 |
Q |
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| T |
22044763 |
aagcataagattcctgtaacatgttttgaatggtcatagattttatcatgaatgtgttagagtgta |
22044828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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