View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_29 (Length: 336)
Name: NF6019_low_29
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_29 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 36327644 - 36327321
Alignment:
| Q |
13 |
aaaataaagatgcccttagaaaaagggatgaaactcttaagaagagaaatgatgctcaactaaaaaatgtgatcatctccgagaaatcaagtaaaaaggt |
112 |
Q |
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| T |
36327644 |
aaaataaagatgcccttagaaaaagggatgaaactcttaagaagagaaatgatgctcaactaaaaaatgtgatcatctccgagaaatcaagtaaaaaggt |
36327545 |
T |
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| Q |
113 |
tagtgacgtaaaatacaaaggtttaggacctttcatatgtttccagatcatatacatcaacattcattcatgcaataatttgttttccaataagaaattt |
212 |
Q |
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| T |
36327544 |
tagtgacgtaaaatacaagggtttaggacctttcatatgtttccagatcatatacatcaacattcattcatgcaataatttgttttccaataagaaattt |
36327445 |
T |
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| Q |
213 |
gaggagttgtttattcttgattgacatttttaaattttggggtttgctannnnnnnctcagttaaaataattgagtatgttttaattatattcttttgga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36327444 |
gaggagttgtttattcttgattgacatttttaaattttggggtttgctatttttttctcagttaaaataattgagtatgttttaattatattcttttgga |
36327345 |
T |
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| Q |
313 |
tgttgcagactgagaaactctata |
336 |
Q |
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| T |
36327344 |
tgttgcagactgagaaactctata |
36327321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 44366454 - 44366312
Alignment:
| Q |
32 |
aaaaagggatgaaactcttaagaagagaaatgatgctcaactaaaaaatgtgatcatctccgagaaatcaagtaaaaaggttagtgacgtaaaatacaaa |
131 |
Q |
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| T |
44366454 |
aaaaagggaagaagccctcaagaagagaaaggatgctcagttgaaaaatgtcatcatctctgagaaatcaagcaagaaggttagtgactctaaatac-aa |
44366356 |
T |
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| Q |
132 |
ggtttaggacctttcatatgtttccagatcatatacatcaacat |
175 |
Q |
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| T |
44366355 |
ggtttaggacctttcgtatgcttccgaattataaacatcaacat |
44366312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 52926695 - 52926609
Alignment:
| Q |
30 |
agaaaaagggatgaaactcttaagaagagaaatgatgctcaactaaaaaatgtgatcatctccgagaaatcaagtaaaaaggttagt |
116 |
Q |
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||||||||||| ||| |||| || |||||||| ||||| || ||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
52926695 |
agaaaaagggaagaagctctcaaaaagagaaaggatgcgcagttaaaaaatgtgatcatctctgagaaatcaagcaagaaggttagt |
52926609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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