View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_3 (Length: 742)
Name: NF6019_low_3
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 278 - 730
Target Start/End: Original strand, 6824977 - 6825430
Alignment:
| Q |
278 |
cctagctaggatatataaaaact-agagaagataattggaaaattagttcctcaaattcaatgaggaaactgtgtccaaatttcgataaagttgatggat |
376 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6824977 |
cctagctaggatatataaaaaattagagaagataattggaaaattagttcctcaaattcaatgaggaaactgtgtccaaatttcgataaagttgatggat |
6825076 |
T |
|
| Q |
377 |
tagaaacggttttagaagttccaattcctgaagatatgtggactggaattggaagcagtggttcaaatcggtggcagaatcttcgtgctttgatgaaagc |
476 |
Q |
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| T |
6825077 |
tagaaacggttttagaagttccaattcctgaagatatgtggactggaattggaagcagtggttcaaatcggtggcagaatcttcgtgctttgatgaaagc |
6825176 |
T |
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| Q |
477 |
acaaatttctaacgataaatgttcgcatctttctgctacttctaataatgaattcattgctttgcttaaacttgttggttctcccttgattcctcttcag |
576 |
Q |
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| T |
6825177 |
acaaatttctaacgataaatgttcgcatctttctgctacttctaataatgaattcattgctttgcttaaacttgttggttctcccttgattcctcttcag |
6825276 |
T |
|
| Q |
577 |
gttcaatgtgatcatactttgactcgtcctcttcaagattctaatatcgtaagcatcctttcttcatcgatttcgtatttctatgtatttatttattgat |
676 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6825277 |
gttcaatgtgatcatactttgactcgtcctcttcaagattctaatatcgtaagcatcctttcttcatcgatttcgtatttgtatgtatttatttattgat |
6825376 |
T |
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| Q |
677 |
tgcttgaattaatttagtaatgagatactcttgtggttttgattcaatgatttt |
730 |
Q |
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| T |
6825377 |
tgcttgaattaatttagtaatgagatactcttgtggttttgattcaatgatttt |
6825430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 6824717 - 6824912
Alignment:
| Q |
18 |
ataactctcgtttccaaaaacaacgcgccaatgaaaaactcttcaggagtcataatcacttttgcaagataggtaaaggttacgagttatatgaggttgt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6824717 |
ataactctcgtttccaaaaacaacgcgccaatgaaaaactcttcatgagtcataatcacttttgcaagataggtaaaggttacgagttatatgaggttgt |
6824816 |
T |
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| Q |
118 |
ttccgctagatttcagttaagaggaaaacgatatgccgttaattccgttaccacaaacacgtcgcatccaatttaaccttcccgcaaataacgcct |
213 |
Q |
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| T |
6824817 |
ttccgctagatttcagttaagaggaaaacgatatgccgttaattccgttaccacaaacacgtcgcatccaatttaaccttcccgcaaataacgcct |
6824912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 602
Target Start/End: Original strand, 52296012 - 52296099
Alignment:
| Q |
515 |
cttctaataatgaattcattgctttgcttaaacttgttggttctcccttgattcctcttcaggttcaatgtgatcatactttgactcg |
602 |
Q |
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|||| ||||||||||||| || |||||||| ||||| ||| |||| | ||||||||||||||||||| |||||||||||||||||| |
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| T |
52296012 |
cttcaaataatgaattcaccgcattgcttaagcttgtgggtgctcctcttattcctcttcaggttcaatctgatcatactttgactcg |
52296099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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