View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_31 (Length: 321)
Name: NF6019_low_31
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 32348901 - 32348594
Alignment:
| Q |
1 |
taataaagattaacagcccgcaaaacgatggccatgattatgcacttgagtctcttcttaaggaagtcaaacttgcatctaagcatgataacatgttaaa |
100 |
Q |
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| T |
32348901 |
taataaagattaacatcccgcaaaacgatggccatgattatgcacttgagtctcttcttaaggaagtcaaacttgcatctaagcatgataacatgttaaa |
32348802 |
T |
|
| Q |
101 |
gtatgatgagtttttaaaactcataaaagatttcaaggctgaaataattgatataagaggtgtccaagcaagagtgagggagctgcttcaaggatatccc |
200 |
Q |
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| T |
32348801 |
gtatgatgagtttttaaaactcataaaagatttcaaggctgaaataattgatataagaggtgtccaagcaagagtgagggagctgcttcaaggatat--c |
32348704 |
T |
|
| Q |
201 |
caggtttaatattcagattcaacaccttcctcatcatgccaactggttcgttcctactttttccattgcacttcacatatcttgatactatgtttctact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32348703 |
caggtttaatattcagattcaacaccttcctcatcattccaactggttcgttcctactttttccattgcacttcacatatcttgatactatgtttctact |
32348604 |
T |
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| Q |
301 |
atatgccttt |
310 |
Q |
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|||||||||| |
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| T |
32348603 |
atatgccttt |
32348594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 31263761 - 31264009
Alignment:
| Q |
1 |
taataaagattaacagcccgcaaaacgatggccatgattatgcacttgagtctcttcttaaggaagtcaaacttgcatctaagcatgataacatgttaaa |
100 |
Q |
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|||||||||| |||| ||| | |||| || ||||||| ||||||| |||| |||| |||||| ||| |||||||||||| | | ||||||| |||| |
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| T |
31263761 |
taataaagatgaacatccctcgaaactattgccatgaacatgcactggagtatcttgttaagggagtgaaacttgcatctcggtacgataacagcataaa |
31263860 |
T |
|
| Q |
101 |
gtatgatgagtttttaaaactcataaaagatttcaaggctgaaataattgatataagaggtgtccaagcaagagtgagggagctgcttcaaggatatccc |
200 |
Q |
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||| |||||||||||||||||||||| |||||||||||||| || |||||||||| |||| |||||| |||| ||||||| |||||||||| | || | |
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| T |
31263861 |
gtacgatgagtttttaaaactcataagagatttcaaggctggaagaattgatatacgaggcgtccaatcaagggtgagggtgctgcttcaaaggcat--c |
31263958 |
T |
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| Q |
201 |
caggtttaatattcagattcaacaccttcctcatcatgccaactggttcgt |
251 |
Q |
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| T |
31263959 |
agggtttattattcggattcaagaccttcctcatcatgccagctggttcgt |
31264009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 14961399 - 14961485
Alignment:
| Q |
106 |
atgagtttttaaaactcataaaagatttcaaggctgaaataattgatataagaggtgtccaagcaagagtgagggagctgcttcaagg |
193 |
Q |
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|||| ||||||||| |||||||||||||||||| | ||| ||||||||||||||||||| |||||||| | |||||||||| |||| |
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| T |
14961399 |
atgactttttaaaagtcataaaagatttcaaggat-aaagaattgatataagaggtgtcgctgcaagagtcaaggagctgcttaaagg |
14961485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 41183460 - 41183501
Alignment:
| Q |
239 |
ccaactggttcgttcctactttttccattgcacttcacatat |
280 |
Q |
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| T |
41183460 |
ccaactggttagttactactttttccattgcacttcacatat |
41183501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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