View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6019_low_34 (Length: 303)

Name: NF6019_low_34
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6019_low_34
NF6019_low_34
[»] chr2 (16 HSPs)
chr2 (10-162)||(10446968-10447119)
chr2 (9-202)||(10545593-10545785)
chr2 (11-202)||(10518822-10519012)
chr2 (11-211)||(10463869-10464068)
chr2 (9-160)||(10489347-10489498)
chr2 (13-202)||(10493379-10493568)
chr2 (9-202)||(10475074-10475266)
chr2 (13-176)||(7478012-7478176)
chr2 (14-202)||(10507938-10508126)
chr2 (61-211)||(28102216-28102365)
chr2 (62-202)||(10849931-10850070)
chr2 (61-211)||(27968454-27968603)
chr2 (61-211)||(28091984-28092133)
chr2 (17-171)||(10863451-10863605)
chr2 (38-202)||(7481624-7481787)
chr2 (55-136)||(6915107-6915188)
[»] chr7 (1 HSPs)
chr7 (34-157)||(15047568-15047691)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 10447119 - 10446968
Alignment:
Q  10 attattcttcaaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10447119 attattcttcaaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggca 10447020  T
Q  110 tgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttttt 162  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10447019 tgaa-ttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttttt 10446968  T

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Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 10545785 - 10545593
Alignment:
Q  9 gattattcttcaaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggc 108  Q
    ||||||||||||||||| |||||  || ||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  10545785 gattattcttcaaattactcaatggttgcttattgcagagaaaaggttgttgttgaagaagttcccgaagatatggaagccttggtgtcagaaaaaaggc 10545686  T
Q  109 atgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 202  Q
    ||||||| ||||||||||| || ||||| ||| | |||||||| |||||||||||||| |||||| ||||| |||||  |||||||||||||||    
T  10545685 atgaactcataaaaactgtatcagaggtagacgataaacttgctgaagctttttgcagcgacaag-cccatttcagcagctgatcttgaggtgt 10545593  T

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Target: chr2; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 10519012 - 10518822
Alignment:
Q  11 ttattcttcaaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcat 110  Q
    ||||||||||||| | |||| | |||||||||||||| ||||| |||||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  10519012 ttattcttcaaatcactcaaatgtttcttattgcagaaaaaaggttgtcgttgaagaagttcccacatatatggaagccttggtgtcagaaaaaaggcat 10518913  T
Q  111 gaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 202  Q
    ||||| |||||||||||||| |||||||||   |||||||| ||||||||||||| || |||| |||||||||||  |||||||| ||||||    
T  10518912 gaactcataaaaactgtgtccgaggtggacggtaaacttgctgaagctttttgcattggcaag-cccatatcagctgctgatcttaaggtgt 10518822  T

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Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 10464068 - 10463869
Alignment:
Q  11 ttattcttcaaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcat 110  Q
    ||||||||||||||| |||||| ||||||||||||||  || | ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  10464068 ttattcttcaaattactcaattgtttcttattgcagaataatggttgtcattgaagaagttcctgcagatatggaagctttggtgttagaaaaaaggcat 10463969  T
Q  111 gaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaa 210  Q
    ||||| |||||||||||||| || |||||  | |||||||| || ||||||||||||| |||| |||||||||||  |||||||| |||||| | |||||    
T  10463968 gaactcataaaaactgtgtcagacgtggatgataaacttgctgaggctttttgcagtggcaag-cccatatcagcagctgatcttcaggtgtgtgggtaa 10463870  T

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Target: chr2; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 10489498 - 10489347
Alignment:
Q  9 gattattcttcaaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggc 108  Q
    |||||||||||| | || ||||||||||||||||||||||||||| |||||| |||   |||||||| | ||||||||||||||||||||||||||||||    
T  10489498 gattattcttcatagtactcaattatttcttattgcagagaaaagcttgtcgctgagctagttcctggatatatggaagccttggtgtcagaaaaaaggc 10489399  T
Q  109 atgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttt 160  Q
    |||||||||||||||||||||| ||||||||| | |||||||| ||||||||    
T  10489398 atgaacttataaaaactgtgtccgaggtggacgataaacttgctgaagcttt 10489347  T

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Target: chr2; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 10493568 - 10493379
Alignment:
Q  13 attcttcaaattattcaatt-atttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatg 111  Q
    ||||||||||||| |||||  |||||||||||||| |||||| |||| |||||||||||||||  | |||||||| |||||||||||  |||||||| ||    
T  10493568 attcttcaaattactcaatccatttcttattgcagtgaaaaggttgttgttgaagaagttcctagaaatatggaatccttggtgtcaagaaaaaggcgtg 10493469  T
Q  112 aacttataaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 202  Q
    | ||||||||||||||||| ||||||||| | |||||||| ||||||||| |||||||||| |||||| |||||  |||||||||||||||    
T  10493468 accttataaaaactgtgtccgaggtggacgataaacttgctgaagcttttagcagtgacaa-tcccatctcagcagctgatcttgaggtgt 10493379  T

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Target: chr2; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 10475266 - 10475074
Alignment:
Q  9 gattattcttcaaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggc 108  Q
    |||||||||||| |||| | | || |||||||||||||| ||||| || |||||||||||||||||| | |||||||||||||||||||| | |||||||    
T  10475266 gattattcttcatattactgagttgtttcttattgcagacaaaaggttttcgttgaagaagttcctggatatatggaagccttggtgtcacagaaaaggc 10475167  T
Q  109 atgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 202  Q
     ||||||||||||||||||||| ||||||||| | |||||||| ||||||||  |  |||||||| ||||| |||||  |||||||||||||||    
T  10475166 gtgaacttataaaaactgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaag-cccatctcagcagctgatcttgaggtgt 10475074  T

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Target: chr2; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 7478012 - 7478176
Alignment:
Q  13 attcttcaaattattcaatta-tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatg 111  Q
    ||||||||||||| ||||||  ||||||||||||||||||||  |  |||||||||||||||| ||  |||||||| ||||||||||  |||||||| ||    
T  7478012 attcttcaaattactcaatttgtttcttattgcagagaaaaggctaccgttgaagaagttccttcatgtatggaagtcttggtgtcaagaaaaaggcgtg 7478111  T
Q  112 aacttataaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgacaagtcc 176  Q
    | ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  7478112 accttataaaaactgtgtccgaggtggacaataaacttgctgaagctttttgcagtgacaagtcc 7478176  T

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Target: chr2; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10508126 - 10507938
Alignment:
Q  14 ttcttcaaattattcaatta-tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatga 112  Q
    ||||| |||||| ||||||  |||||||||||||||||||| ||||||||| |||||||||||   ||||||| ||||||||||||| |||||||| |||    
T  10508126 ttcttgaaattactcaatttgtttcttattgcagagaaaaggttgtcgttggagaagttcctggctatatggacgccttggtgtcaggaaaaaggcgtga 10508027  T
Q  113 acttataaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 202  Q
    |||||||||||||||||| ||||| ||| | |||||||| ||||||||  |  |||||||| |||||||||||  |||||||||||||||    
T  10508026 acttataaaaactgtgtccgaggttgacgataaacttgctgaagctttcggtggtgacaag-cccatatcagcagctgatcttgaggtgt 10507938  T

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Target: chr2; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 28102216 - 28102365
Alignment:
Q  61 ttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttt 160  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||||||||||  |||||||| | |||||||| ||||||||    
T  28102216 ttgaagaagttcctgcagatatgaaagccttggtctcagaaaagaggcgtgaactcatagaaactgtgtcaaaggtggacgaaaaacttgctgaagcttt 28102315  T
Q  161 ttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 211  Q
    ||||||||| ||| |||||||||||  ||||||||||||||| ||| ||||    
T  28102316 ttgcagtgataag-cccatatcagcaactgatcttgaggtgtgttgttaac 28102365  T

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Target: chr2; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 10850070 - 10849931
Alignment:
Q  62 tgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagctttt 161  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||| ||| || ||| |||||||||||||||||||| | |||||||| |||||||||    
T  10850070 tgaagaagttcctgaagatatggaagacttcgtgtcagaaaaaaggcgtgagctcatacaaactgtgtctgaggtggacgataaacttgctgaagctttt 10849971  T
Q  162 tgcagtgacaagtcccatatcagcctctgatcttgaggtgt 202  Q
     || |||||||| |||||||||||  |||||||||||||||    
T  10849970 cgctgtgacaag-cccatatcagcacctgatcttgaggtgt 10849931  T

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Target: chr2; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 27968603 - 27968454
Alignment:
Q  61 ttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttt 160  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||||||||||  |||||||| | |||||||| ||||||||    
T  27968603 ttgaagaagttcctgcagatatgaaagccttggtctcagaaaagaggcgtgaactcatagaaactgtgtcaaaggtggacgaaaaacttgctgaagcttt 27968504  T
Q  161 ttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 211  Q
    |||||| || ||| |||||||||||  ||||||||||||||| ||| ||||    
T  27968503 ttgcagcgataag-cccatatcagcaactgatcttgaggtgtgttgttaac 27968454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 28091984 - 28092133
Alignment:
Q  61 ttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttt 160  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||||||||||  |||||||| | |||||||| ||||||||    
T  28091984 ttgaagaagttcctgcagatatgaaagccttggtctcagaaaagaggcgtgaactcatagaaactgtgtcaaaggtggacgaaaaacttgctgaagcttt 28092083  T
Q  161 ttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 211  Q
    |||||| || ||| |||||||||||  ||||||||||||||| ||| ||||    
T  28092084 ttgcagcgataag-cccatatcagcaactgatcttgaggtgtgttgttaac 28092133  T

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Target: chr2; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 10863605 - 10863451
Alignment:
Q  17 ttcaaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaactt 116  Q
    ||||||||| |||||| ||||| |||||||||||||| || ||||||| |||||||||||| |||||||||||| |||||| |||||||| || |||||     
T  10863605 ttcaaattactcaattgtttctgattgcagagaaaaggttttcgttgaggaagttcctgcacatatggaagcctcggtgtctgaaaaaagacaggaactc 10863506  T
Q  117 ataaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgaca 171  Q
    ||| |||| ||||| ||||||||  | |||||||| |||||| ||| ||||||||    
T  10863505 atagaaaccgtgtcagaggtggatgataaacttgctgaagctctttccagtgaca 10863451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 7481624 - 7481787
Alignment:
Q  38 ttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtg 137  Q
    ||||||||||||||||  |   |||||||||||||||||   |||||||||||||||||||  |||||||| ||| |||||| |||||||| | ||||      
T  7481624 ttattgcagagaaaaggctactgttgaagaagttcctgcgtgtatggaagccttggtgtcaagaaaaaggcgtgaccttatagaaactgtgcccgaggct 7481723  T
Q  138 gacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 202  Q
    ||| | |||||||| ||||||||| ||||||||||| ||||| |||||| |||||||||||||||    
T  7481724 gacgataaacttgctgaagcttttagcagtgacaag-cccatctcagccgctgatcttgaggtgt 7481787  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 6915107 - 6915188
Alignment:
Q  55 ttgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggt 136  Q
    |||| |||| |||||| ||||||||||||||||| |||||  |||| ||||| | |||||| ||| |||||||||| |||||    
T  6915107 ttgttgttggagaagtgcctgcagatatggaagctttggtagcagagaaaagacgtgaactcatagaaactgtgtcagaggt 6915188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 15047691 - 15047568
Alignment:
Q  34 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 133  Q
    |||||||||| ||||||||  ||  | |||||||||| ||| |||||||||||||||||||| |||||||||| |||||||| ||| |||||||||| ||    
T  15047691 tttcttattgtagagaaaaacttaccattgaagaagtgccttcagatatggaagccttggtggcagaaaaaagacatgaactaatagaaactgtgtcaga 15047592  T
Q  134 ggtggacaacaaacttgcggaagc 157  Q
    ||| ||  | | ||||||||||||    
T  15047591 ggttgatgatatacttgcggaagc 15047568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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