View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6019_low_4 (Length: 701)

Name: NF6019_low_4
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6019_low_4
NF6019_low_4
[»] chr3 (21 HSPs)
chr3 (17-598)||(26403095-26403679)
chr3 (597-691)||(43207447-43207542)
chr3 (599-688)||(53507094-53507183)
chr3 (598-688)||(44708281-44708372)
chr3 (599-688)||(50939445-50939534)
chr3 (599-691)||(48156942-48157036)
chr3 (598-691)||(9878894-9878986)
chr3 (599-688)||(34290849-34290940)
chr3 (616-688)||(54407368-54407439)
chr3 (598-664)||(48720530-48720596)
chr3 (265-370)||(26395415-26395520)
chr3 (204-288)||(26402493-26402577)
chr3 (608-665)||(47467591-47467648)
chr3 (614-665)||(50258733-50258784)
chr3 (613-663)||(36605861-36605911)
chr3 (614-663)||(27078819-27078868)
chr3 (614-663)||(27084616-27084665)
chr3 (614-663)||(36716276-36716325)
chr3 (614-663)||(38681348-38681397)
chr3 (614-663)||(54619454-54619503)
chr3 (614-650)||(3954866-3954902)
[»] chr6 (13 HSPs)
chr6 (597-691)||(20711925-20712020)
chr6 (614-691)||(27788895-27788972)
chr6 (597-688)||(17353757-17353848)
chr6 (597-688)||(235435-235527)
chr6 (614-688)||(19986982-19987056)
chr6 (598-688)||(28075587-28075678)
chr6 (611-665)||(30832666-30832720)
chr6 (614-664)||(23070889-23070939)
chr6 (614-663)||(11081684-11081733)
chr6 (614-663)||(13727650-13727699)
chr6 (614-675)||(19741212-19741273)
chr6 (614-650)||(21280349-21280385)
chr6 (614-650)||(27314778-27314814)
[»] chr8 (10 HSPs)
chr8 (597-688)||(42600582-42600674)
chr8 (614-691)||(23798468-23798545)
chr8 (614-688)||(23606831-23606905)
chr8 (614-688)||(10917210-10917283)
chr8 (614-665)||(20003875-20003926)
chr8 (614-689)||(45472207-45472281)
chr8 (614-663)||(2952473-2952522)
chr8 (614-663)||(3048774-3048823)
chr8 (614-663)||(5860996-5861045)
chr8 (615-663)||(30883127-30883175)
[»] chr1 (15 HSPs)
chr1 (599-688)||(40502000-40502090)
chr1 (598-692)||(9173228-9173322)
chr1 (599-688)||(13913693-13913782)
chr1 (611-688)||(19955544-19955620)
chr1 (599-688)||(17168769-17168857)
chr1 (614-688)||(27559463-27559538)
chr1 (598-688)||(44895466-44895557)
chr1 (614-691)||(1367084-1367161)
chr1 (596-688)||(51607648-51607742)
chr1 (614-689)||(23181727-23181801)
chr1 (614-665)||(14146221-14146272)
chr1 (614-647)||(5027991-5028024)
chr1 (614-663)||(27906949-27906998)
chr1 (614-663)||(44655555-44655604)
chr1 (614-650)||(41697293-41697329)
[»] chr7 (13 HSPs)
chr7 (599-691)||(47985176-47985268)
chr7 (598-691)||(19691896-19691990)
chr7 (598-692)||(38415081-38415175)
chr7 (614-688)||(24525894-24525968)
chr7 (614-688)||(48984054-48984127)
chr7 (599-688)||(20091491-20091579)
chr7 (600-688)||(25010254-25010342)
chr7 (598-688)||(10329619-10329710)
chr7 (614-688)||(23551281-23551355)
chr7 (614-664)||(28749597-28749647)
chr7 (596-647)||(10027615-10027667)
chr7 (614-650)||(12596443-12596479)
chr7 (608-663)||(18777019-18777075)
[»] chr2 (12 HSPs)
chr2 (599-691)||(26715931-26716023)
chr2 (599-688)||(27506951-27507041)
chr2 (614-691)||(9045848-9045924)
chr2 (597-688)||(24410234-24410325)
chr2 (619-688)||(8327488-8327556)
chr2 (599-684)||(10762779-10762865)
chr2 (614-663)||(4505695-4505744)
chr2 (614-665)||(3952915-3952966)
chr2 (614-663)||(3155019-3155068)
chr2 (608-645)||(5952949-5952986)
chr2 (614-663)||(6964808-6964857)
chr2 (595-646)||(52968-53020)
[»] chr4 (24 HSPs)
chr4 (614-688)||(24969258-24969332)
chr4 (602-688)||(40089328-40089413)
chr4 (614-691)||(16844843-16844921)
chr4 (614-691)||(32128408-32128485)
chr4 (602-688)||(54083454-54083541)
chr4 (595-691)||(2790947-2791044)
chr4 (599-664)||(38352489-38352554)
chr4 (616-691)||(16882601-16882675)
chr4 (614-688)||(37777434-37777509)
chr4 (599-688)||(19498313-19498402)
chr4 (617-681)||(34027407-34027471)
chr4 (615-673)||(35463958-35464016)
chr4 (599-647)||(54779441-54779490)
chr4 (611-663)||(38209842-38209894)
chr4 (614-665)||(1105447-1105498)
chr4 (614-685)||(10431421-10431492)
chr4 (614-689)||(35780532-35780606)
chr4 (608-650)||(9579483-9579525)
chr4 (608-650)||(9585178-9585220)
chr4 (614-664)||(45560704-45560754)
chr4 (614-663)||(55255096-55255145)
chr4 (614-650)||(5128997-5129033)
chr4 (614-674)||(17679233-17679293)
chr4 (614-674)||(47127997-47128057)
[»] chr5 (14 HSPs)
chr5 (614-685)||(16199005-16199076)
chr5 (599-688)||(27923885-27923974)
chr5 (598-691)||(38869567-38869660)
chr5 (599-688)||(7670728-7670816)
chr5 (617-688)||(9364113-9364183)
chr5 (599-688)||(40389743-40389831)
chr5 (614-691)||(16799530-16799606)
chr5 (614-665)||(15480228-15480279)
chr5 (614-665)||(19523109-19523160)
chr5 (614-663)||(34756615-34756664)
chr5 (614-650)||(22987481-22987517)
chr5 (614-682)||(30853282-30853350)
chr5 (614-650)||(31881604-31881640)
chr5 (599-663)||(34855925-34855989)
[»] scaffold0027 (1 HSPs)
scaffold0027 (597-688)||(4147-4238)
[»] scaffold0039 (1 HSPs)
scaffold0039 (599-673)||(106379-106454)
[»] scaffold0070 (1 HSPs)
scaffold0070 (614-650)||(1027-1063)


Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 17 - 598
Target Start/End: Original strand, 26403095 - 26403679
Alignment:
Q  17 acatggtgcaactagaagagaaaccagtggataaaaattcaaacatagttgataaacccttcttacatagtgctttttcagcatttcgacgatggcaacc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26403095 acatggtgcaactagaagagaaaccagtggataaaaattcaaacatagttgatagacccttcttacatagtgctttttcagcatttcgacgatggcaacc 26403194  T
Q  117 atcttagaagagtgctggcctttggtaatcaagaggcatgcatcagtggagtaaaagaattaccacaagacgaggacatcatcaacaacaacaataacat 216  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26403195 atcttagaagagtgctggcctttgtaaatcaagaggcatgcatcagtggagtaaaagaattaccacaagacaaggacatcatcaacaacaacaataacat 26403294  T
Q  217 gaatatagagaaatcaaatcttggtcatgttaagaagaaccgcatcaatggtggtagtgcaactacaagtgatagtgttggtgaccaagcaatacaaaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  26403295 gaatatagagaaatcaaatcttggtcatgttaagaagaacagcatcaatggtggtagtgcaactacaagtgatagtgtt-gtgaccaagcaacacaaaaa 26403393  T
Q  317 atggatcctaagatgctcaaactgtatacttatgttacttatagttgtgagcaatataacagtatgttggcaagtaaaaaagcatagagaatcacaattt 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  26403394 atggatcctaagatgctcaaactgtatacttatgttacttatagttgtgagcaacataacagtatgttggcaagttaaaaagcatagagaatcacaattt 26403493  T
Q  417 ttaatccatagggctaagtgtggtggaaataaaatttggnnnnnnnnnnnnnnnnnnnnnnnnnagtaaaacctgaaaaaactagtatcataaatttaat 516  Q
    |||||||||||||||||||| ||||||||||||||||||                         |||||||||||||||||||||||| |||||||||||    
T  26403494 ttaatccatagggctaagtgaggtggaaataaaatttggcttttgttttgattttttttcttttagtaaaacctgaaaaaactagtataataaatttaat 26403593  T
Q  517 aaacttttaattcaaagattaaaataaat----ttatctagtcgttcgggtttcaagttattagctttatcaactatgtacctgat 598  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26403594 aaacttttaattcaaagattaaaataaatttaattatctagtcgttcgggtttcaagttattagctttatcaactatgtacctgat 26403679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 597 - 691
Target Start/End: Complemental strand, 43207542 - 43207447
Alignment:
Q  597 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  43207542 atcaggcccggtcctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactagtatta 43207447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 599 - 688
Target Start/End: Complemental strand, 53507183 - 53507094
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  53507183 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 53507094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 598 - 688
Target Start/End: Original strand, 44708281 - 44708372
Alignment:
Q  598 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||    
T  44708281 tcaggcccggctctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatatccactagta 44708372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 599 - 688
Target Start/End: Complemental strand, 50939534 - 50939445
Alignment:
Q  599 caggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  50939534 caggcccgtccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccaccagta 50939445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 599 - 691
Target Start/End: Original strand, 48156942 - 48157036
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagttt-gtttttaatacccactagtatta 691  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||  ||||||||||||||||||||||    
T  48156942 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcaatcatgggcctaaattttattttttaatacccactagtatta 48157036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 598 - 691
Target Start/End: Complemental strand, 9878986 - 9878894
Alignment:
Q  598 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||  || ||||||||||||||||||||||    
T  9878986 tcaggtccggccctgagggggtgcaaacagctcaacagagctgggcctcccttaatcatgggcctcaa--ttttttttaatacccactagtatta 9878894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 599 - 688
Target Start/End: Complemental strand, 34290940 - 34290849
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-gtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||  ||| ||||||||| |||||||||    
T  34290940 caggcccgaccctgagggggtgcaaacagctcaacagagttgggcctccctcaggcatgggcctcaatttttttttttaatatccactagta 34290849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 616 - 688
Target Start/End: Complemental strand, 54407439 - 54407368
Alignment:
Q  616 ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  54407439 ggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa-tttttttttaatacctactagta 54407368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 598 - 664
Target Start/End: Complemental strand, 48720596 - 48720530
Alignment:
Q  598 tcaggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 664  Q
    |||||| || |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||    
T  48720596 tcaggcacggccctgacgggtgcaaacagctcaacagagctgagcttccctcagtcatgggcctcaa 48720530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 26395415 - 26395520
Alignment:
Q  265 tggtggtagtgcaactacaagtgatagtgttggtgaccaagcaatacaaaaaatggatcctaagatgctcaaactgtatacttatgttacttatagttgt 364  Q
    ||||||||||||| || ||| || | |||||||||| ||||||| ||||||  ||||||| |||| |||||||| |||||||| ||| ||||||| ||||    
T  26395415 tggtggtagtgcatctgcaaatgttggtgttggtgatcaagcaacacaaaatttggatccaaagaggctcaaacggtatacttgtgtaacttatatttgt 26395514  T
Q  365 gagcaa 370  Q
    ||||||    
T  26395515 gagcaa 26395520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 26402493 - 26402577
Alignment:
Q  204 acaacaataacatgaatatagagaaatcaaatcttggtcatgttaagaagaaccgcatcaatggtggtagtgcaactacaagtga 288  Q
    ||||||||||| | |||||||| ||||||||||||||| || || ||||||||| ||| ||||||||||| ||||||||| ||||    
T  26402493 acaacaataacttaaatatagaaaaatcaaatcttggttatattgagaagaaccacatgaatggtggtagagcaactacaggtga 26402577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 665
Target Start/End: Original strand, 47467591 - 47467648
Alignment:
Q  608 ccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 665  Q
    ||||||||||||||||||||||||  |||||| ||||||||||   ||||||||||||    
T  47467591 ccctgaggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaag 47467648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 665
Target Start/End: Complemental strand, 50258784 - 50258733
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 665  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  50258784 ggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaag 50258733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 613 - 663
Target Start/End: Original strand, 36605861 - 36605911
Alignment:
Q  613 aggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    |||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  36605861 aggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36605911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 27078868 - 27078819
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  27078868 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 27084665 - 27084616
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  27084665 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27084616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 36716325 - 36716276
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  36716325 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36716276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 38681397 - 38681348
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  38681397 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38681348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 54619503 - 54619454
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  54619503 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 54619454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 650
Target Start/End: Complemental strand, 3954902 - 3954866
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    ||||||||||||||||||  |||||||||||||||||    
T  3954902 ggggtgcaaacagctcaaacgagctgggcctccctca 3954866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 9e-35; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 597 - 691
Target Start/End: Complemental strand, 20712020 - 20711925
Alignment:
Q  597 atcaggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  20712020 atcaggcccggccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactagtatta 20711925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 614 - 691
Target Start/End: Complemental strand, 27788972 - 27788895
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  27788972 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaaatttttttttaatacccactagtatta 27788895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 597 - 688
Target Start/End: Original strand, 17353757 - 17353848
Alignment:
Q  597 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  17353757 atcaggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 17353848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 597 - 688
Target Start/End: Complemental strand, 235527 - 235435
Alignment:
Q  597 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  235527 atcaggcccgtccctgagggggtgcaaacagcttaacagagctgggcctccctcagtcatggaccttaattttttttttaatacccactagta 235435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 614 - 688
Target Start/End: Original strand, 19986982 - 19987056
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||    
T  19986982 ggggtgcaaacagctcaacagagctgggcctccctcaattatgggcctcaaatttttttttaatacccactagta 19987056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 598 - 688
Target Start/End: Original strand, 28075587 - 28075678
Alignment:
Q  598 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||||| | |||||||| ||||||||||||||||||||| ||| ||| |||||||||||| |||| ||| |||||||||||||||||||    
T  28075587 tcaggcccggctctgagggggtgcaaacagctcaacagagctaggcttccttcagtcatgggcttcaattttttttttaatacccactagta 28075678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 665
Target Start/End: Complemental strand, 30832720 - 30832666
Alignment:
Q  611 tgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 665  Q
    |||||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  30832720 tgaggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaag 30832666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 614 - 664
Target Start/End: Complemental strand, 23070939 - 23070889
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 664  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  23070939 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 23070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 11081733 - 11081684
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  ||||| ||||||||| || |||||||||||    
T  11081733 ggggtgcaaacagctcaatggagctaggcctccctaaggcatgggcctca 11081684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 13727699 - 13727650
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  13727699 ggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctca 13727650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 675
Target Start/End: Complemental strand, 19741273 - 19741212
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttta 675  Q
    ||||||||||||||||||  |||||||||||||||||   |||| |||||| ||| ||||||    
T  19741273 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaatttttttttta 19741212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 650
Target Start/End: Original strand, 21280349 - 21280385
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    ||||||||||||||||||  |||||||||||||||||    
T  21280349 ggggtgcaaacagctcaaacgagctgggcctccctca 21280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 650
Target Start/End: Complemental strand, 27314814 - 27314778
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    ||||||||||||||||||  |||||||||||||||||    
T  27314814 ggggtgcaaacagctcaaacgagctgggcctccctca 27314778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 597 - 688
Target Start/End: Original strand, 42600582 - 42600674
Alignment:
Q  597 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  42600582 atcaggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttatttttaatacccactagta 42600674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 614 - 691
Target Start/End: Complemental strand, 23798545 - 23798468
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  23798545 ggggtgcgaacagctcaacaaagctgggcctccctcagtcatgggcctcaaatttttttttaatacccactagtatta 23798468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 614 - 688
Target Start/End: Complemental strand, 23606905 - 23606831
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  23606905 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaaattttcttttaatacccactagta 23606831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 614 - 688
Target Start/End: Original strand, 10917210 - 10917283
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  10917210 ggggtgcaaacagctcaacagagctgggcctccctcactcatgggccacaa-tttttttttaatacccactagta 10917283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 665
Target Start/End: Complemental strand, 20003926 - 20003875
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 665  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  20003926 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 20003875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 689
Target Start/End: Original strand, 45472207 - 45472281
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtat 689  Q
    ||||||||||||||||||| |||||||||| ||| ||   ||||||||||| ||| ||||| ||||||| ||||||    
T  45472207 ggggtgcaaacagctcaaccgagctgggccacccccaaggatgggcctcaa-ttttttttttatacccattagtat 45472281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 2952522 - 2952473
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  2952522 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 2952473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 3048823 - 3048774
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  3048823 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3048774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 5861045 - 5860996
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  5861045 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 5860996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 615 - 663
Target Start/End: Original strand, 30883127 - 30883175
Alignment:
Q  615 gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    |||||||||||||||||  |||||||||||||||||   ||||||||||    
T  30883127 gggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 30883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 9e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 599 - 688
Target Start/End: Complemental strand, 40502090 - 40502000
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  40502090 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactagta 40502000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 598 - 692
Target Start/End: Complemental strand, 9173322 - 9173228
Alignment:
Q  598 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtattat 692  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  9173322 tcaggcccggccctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagtattat 9173228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 599 - 688
Target Start/End: Complemental strand, 13913782 - 13913693
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  13913782 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 13913693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 611 - 688
Target Start/End: Original strand, 19955544 - 19955620
Alignment:
Q  611 tgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  19955544 tgaggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa-tttttttttaatacccactagta 19955620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 599 - 688
Target Start/End: Original strand, 17168769 - 17168857
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||  || |||||||||||||||||||    
T  17168769 caggcccgaccctgaggggatgcaaacagctcaatagagcttggcctccctcagtcatgggcctcaa--ttttttttaatacccactagta 17168857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 614 - 688
Target Start/End: Original strand, 27559463 - 27559538
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-gtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||||    
T  27559463 ggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaatttttttttttaatacccactagta 27559538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 598 - 688
Target Start/End: Original strand, 44895466 - 44895557
Alignment:
Q  598 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||| |||||||||    
T  44895466 tcaggctcggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggccacatttttttttttaatatccactagta 44895557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 614 - 691
Target Start/End: Complemental strand, 1367161 - 1367084
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||    
T  1367161 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaaaaaaaattttaatacccactagtatta 1367084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 596 - 688
Target Start/End: Complemental strand, 51607742 - 51607648
Alignment:
Q  596 gatcaggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca-agtttgtttttaatacccactagta 688  Q
    |||||||||||  | ||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||   ||| ||||||||| |||||||||    
T  51607742 gatcaggcccggtcatgaggtggtgcaaacagctcaatagagctgggccttcctcaatcatgggcctcattttttttttttaatatccactagta 51607648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 614 - 689
Target Start/End: Original strand, 23181727 - 23181801
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtat 689  Q
    ||||||||||||||||||| |||||||||| ||| || | ||||||||||| ||| ||||| ||||||| ||||||    
T  23181727 ggggtgcaaacagctcaaccgagctgggccacccccaatgatgggcctcaaattt-ttttttatacccattagtat 23181801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 665
Target Start/End: Original strand, 14146221 - 14146272
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 665  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  14146221 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 14146272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 647
Target Start/End: Complemental strand, 5028024 - 5027991
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccc 647  Q
    ||||||||||||||||||| ||||||||||||||    
T  5028024 ggggtgcaaacagctcaaccgagctgggcctccc 5027991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 27906998 - 27906949
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  27906998 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27906949  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Original strand, 44655555 - 44655604
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  44655555 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 44655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 650
Target Start/End: Complemental strand, 41697329 - 41697293
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    ||||||||||||||||||  |||||||||||||||||    
T  41697329 ggggtgcaaacagctcaaacgagctgggcctccctca 41697293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 599 - 691
Target Start/End: Complemental strand, 47985268 - 47985176
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  47985268 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagtatta 47985176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 598 - 691
Target Start/End: Original strand, 19691896 - 19691990
Alignment:
Q  598 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtc-atgggcctcaagtttgtttttaatacccactagtatta 691  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||    
T  19691896 tcaggcccgaccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcaatgggcctcaa-tttttttttaataccaactagtatta 19691990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 598 - 692
Target Start/End: Complemental strand, 38415175 - 38415081
Alignment:
Q  598 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtattat 692  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  38415175 tcaggcccggctctgaggggatgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaaattt-tttttaatacccactagtattat 38415081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 614 - 688
Target Start/End: Complemental strand, 24525968 - 24525894
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  24525968 ggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaattttttttttaatacccactagta 24525894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 614 - 688
Target Start/End: Complemental strand, 48984127 - 48984054
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  48984127 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 48984054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 599 - 688
Target Start/End: Complemental strand, 20091579 - 20091491
Alignment:
Q  599 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  20091579 caggcccgtccctggggggtgcaaacagctcaatagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccaccagta 20091491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 600 - 688
Target Start/End: Original strand, 25010254 - 25010342
Alignment:
Q  600 aggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  25010254 aggcccggccctgagggggtacaaacagctcaacagagttgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 25010342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 598 - 688
Target Start/End: Complemental strand, 10329710 - 10329619
Alignment:
Q  598 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||||  ||||||||| ||||||||| ||||||| ||| || |||||||||||||||||||||| ||| |||||||||||||||||||    
T  10329710 tcaggcccggtcctgagggggtgcaaacagttcaacagcgctaggtctccctcagtcatgggcctcaattttttttttaatacccactagta 10329619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 614 - 688
Target Start/End: Complemental strand, 23551355 - 23551281
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||||||||||||| |||| ||| ||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  23551355 ggggtgcaaacagctcaatagagttggacctccctcaatcatgggcctcaattttttttttaatacccactagta 23551281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 614 - 664
Target Start/End: Original strand, 28749597 - 28749647
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 664  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  28749597 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 28749647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 596 - 647
Target Start/End: Original strand, 10027615 - 10027667
Alignment:
Q  596 gatcaggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccc 647  Q
    ||||||| ||| ||||| || |||||||||||||| |||||||||||||||||    
T  10027615 gatcagggccggccctggggaggtgcaaacagctctacagagctgggcctccc 10027667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 650
Target Start/End: Complemental strand, 12596479 - 12596443
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    ||||||||||||||||||  |||||||||||||||||    
T  12596479 ggggtgcaaacagctcaaacgagctgggcctccctca 12596443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 608 - 663
Target Start/End: Complemental strand, 18777075 - 18777019
Alignment:
Q  608 ccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    |||||||| ||||||||||||||||  |||||||||||||||||   ||||||||||    
T  18777075 ccctgaggaggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 18777019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 599 - 691
Target Start/End: Original strand, 26715931 - 26716023
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  26715931 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagtatta 26716023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 599 - 688
Target Start/End: Complemental strand, 27507041 - 27506951
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  27507041 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccattagta 27506951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 614 - 691
Target Start/End: Original strand, 9045848 - 9045924
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  9045848 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccattagtatta 9045924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 597 - 688
Target Start/End: Original strand, 24410234 - 24410325
Alignment:
Q  597 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  24410234 atcaggcccgtccctaagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccattagta 24410325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 619 - 688
Target Start/End: Original strand, 8327488 - 8327556
Alignment:
Q  619 gcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  8327488 gcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 8327556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 599 - 684
Target Start/End: Complemental strand, 10762865 - 10762779
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccact 684  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||    
T  10762865 cagggccggccctgaggggatgcaaacagctcaacagagctgggcttccctcaatcatgggcctcaattttttttttaatacccact 10762779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 663
Target Start/End: Original strand, 4505695 - 4505744
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  ||||||||||||||||| | ||||||||||    
T  4505695 ggggtgcaaacagctcaaacgagctgggcctccctcaatgatgggcctca 4505744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 665
Target Start/End: Original strand, 3952915 - 3952966
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 665  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  3952915 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 3952966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Original strand, 3155019 - 3155068
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  3155019 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3155068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 645
Target Start/End: Complemental strand, 5952986 - 5952949
Alignment:
Q  608 ccctgaggggtgcaaacagctcaacagagctgggcctc 645  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  5952986 ccctgaggggtgcaaacagctcaaacgagctgggcctc 5952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Original strand, 6964808 - 6964857
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  6964808 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 6964857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 646
Target Start/End: Complemental strand, 53020 - 52968
Alignment:
Q  595 tgatcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctcc 646  Q
    |||||||| |||||||||||||| ||||| |||||| || |||||||||||||    
T  53020 tgatcagggccgaccctgagggggtgcaagcagctctactgagctgggcctcc 52968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 614 - 688
Target Start/End: Original strand, 24969258 - 24969332
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  24969258 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactagta 24969332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 602 - 688
Target Start/End: Original strand, 40089328 - 40089413
Alignment:
Q  602 gcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  40089328 gcccggccatgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 40089413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 614 - 691
Target Start/End: Original strand, 16844843 - 16844921
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttt-aatacccactagtatta 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  16844843 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaaatacccactagtatta 16844921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 614 - 691
Target Start/End: Original strand, 32128408 - 32128485
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||    
T  32128408 ggggtgcaaacagctcaacagagctgggcctccctcagttatggacctcaattttttttttaatacccactagtatta 32128485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 602 - 688
Target Start/End: Complemental strand, 54083541 - 54083454
Alignment:
Q  602 gcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    ||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  54083541 gcccgtccctgagggggtgcaaacagctcaatagagctgggcatccctcagtcatgggcctcaattttttttttaatacccactagta 54083454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 595 - 691
Target Start/End: Complemental strand, 2791044 - 2790947
Alignment:
Q  595 tgatcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||| || ||||||||||||||    
T  2791044 tgatcaggcccgactctgagggggtgcaaacagctcaacagagctgggtctccctcagtcatggacgtcaatttttttttgaaaacccactagtatta 2790947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 599 - 664
Target Start/End: Complemental strand, 38352554 - 38352489
Alignment:
Q  599 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 664  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38352554 caggcccggccctgaggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 616 - 691
Target Start/End: Complemental strand, 16882675 - 16882601
Alignment:
Q  616 ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||| ||||||||||||||||||||||    
T  16882675 ggtgcaaacagctcaacagagctgggcttcccttagtcatgagcctcaa-tttttttttaatacccactagtatta 16882601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 614 - 688
Target Start/End: Complemental strand, 37777509 - 37777434
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-gtttgtttttaatacccactagta 688  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||  ||| |||||||||||||||||||    
T  37777509 ggggtgcaaacagctcaacagagctggacctccctcaatcatgggcctcaatttttttttttaatacccactagta 37777434  T

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Target: chr4; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 599 - 688
Target Start/End: Original strand, 19498313 - 19498402
Alignment:
Q  599 caggcccgaccctga-ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||| |||||| |||||||||| |||||||||| |||||||||||| || ||||||||||||| ||| |||||||||||||||||||    
T  19498313 caggcccggccctgacggggtgcaaatagctcaacagtgctgggcctcccccaatcatgggcctcaa-tttttttttaatacccactagta 19498402  T

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Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 617 - 681
Target Start/End: Original strand, 34027407 - 34027471
Alignment:
Q  617 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaataccc 681  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  34027407 gtgcaaactgctcaacagagctgggtctccctcagtcatgggcctcaattttttttttaataccc 34027471  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 673
Target Start/End: Original strand, 35463958 - 35464016
Alignment:
Q  615 gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttt 673  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||| ||||    
T  35463958 gggtgcaaacagctcaacagagctgggcctcccccagccatgggcatcaattttttttt 35464016  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 647
Target Start/End: Original strand, 54779441 - 54779490
Alignment:
Q  599 caggcccgaccctgaggg-gtgcaaacagctcaacagagctgggcctccc 647  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  54779441 caggcccggccctgagggagtgcaaacagctcaaccgagctgggcctccc 54779490  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 611 - 663
Target Start/End: Complemental strand, 38209894 - 38209842
Alignment:
Q  611 tgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    |||||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  38209894 tgaggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38209842  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 665
Target Start/End: Original strand, 1105447 - 1105498
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 665  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  1105447 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 1105498  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 685
Target Start/End: Complemental strand, 10431492 - 10431421
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccacta 685  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||   | ||||| ||||||||||    
T  10431492 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaaaaatattttttatacccacta 10431421  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 689
Target Start/End: Complemental strand, 35780606 - 35780532
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtat 689  Q
    ||||||||||||||||||| |||||||||||||| ||   || |||||||| ||| ||||||||| ||| ||||||    
T  35780606 ggggtgcaaacagctcaaccgagctgggcctcccccacggataggcctcaa-tttttttttaatatccagtagtat 35780532  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 650
Target Start/End: Complemental strand, 9579525 - 9579483
Alignment:
Q  608 ccctgaggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  9579525 ccctgaggcgtgcaaacagctcaaacgagctgggcctccctca 9579483  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 650
Target Start/End: Complemental strand, 9585220 - 9585178
Alignment:
Q  608 ccctgaggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  9585220 ccctgaggcgtgcaaacagctcaaacgagctgggcctccctca 9585178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 614 - 664
Target Start/End: Complemental strand, 45560754 - 45560704
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 664  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  45560754 ggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctcaa 45560704  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Original strand, 55255096 - 55255145
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  55255096 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 55255145  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 650
Target Start/End: Complemental strand, 5129033 - 5128997
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    ||||||||||||||||||  |||||||||||||||||    
T  5129033 ggggtgcaaacagctcaaacgagctgggcctccctca 5128997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 674
Target Start/End: Original strand, 17679233 - 17679293
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttt 674  Q
    ||||||||||||||||||  |||||| ||||||||||   ||||||||||| ||| |||||    
T  17679233 ggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaattttattttt 17679293  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 674
Target Start/End: Original strand, 47127997 - 47128057
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttt 674  Q
    |||||||||||||| |||  |||||||||||||||||   ||||||||||| ||| |||||    
T  47127997 ggggtgcaaacagcccaaacgagctgggcctccctcaaggatgggcctcaatttttttttt 47128057  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 614 - 685
Target Start/End: Complemental strand, 16199076 - 16199005
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccacta 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  16199076 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccacta 16199005  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 599 - 688
Target Start/End: Original strand, 27923885 - 27923974
Alignment:
Q  599 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  27923885 caggcccgtccctgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa-tttttttttaatacccactagta 27923974  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 598 - 691
Target Start/End: Complemental strand, 38869660 - 38869567
Alignment:
Q  598 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    ||||||||| || ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  38869660 tcaggcccggccatgagggggtgcaaacagctcaacaaagctgggcctccctcagtcatgggcctcaaattt-tttttaatacccactagtatta 38869567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 599 - 688
Target Start/End: Original strand, 7670728 - 7670816
Alignment:
Q  599 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||| ||||||| |||||||||||    
T  7670728 caggcccggccctgaggggtgcaaacagctcaacagagttgggcctccctcagtcatgggtcttaa-tttttttttaacacccactagta 7670816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 617 - 688
Target Start/End: Original strand, 9364113 - 9364183
Alignment:
Q  617 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||    
T  9364113 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatatccactagta 9364183  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 599 - 688
Target Start/End: Complemental strand, 40389831 - 40389743
Alignment:
Q  599 caggcccgaccctgag-gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||  || |||||||||||||||||||    
T  40389831 caggcccggccctgagcgggtgcaaacagctcaacagacctgggcctccctcagtcatggacctcaa--ttttttttaatacccactagta 40389743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 614 - 691
Target Start/End: Complemental strand, 16799606 - 16799530
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 691  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||    
T  16799606 ggggtgcaaacagctcaatagagctaggcctccctcagtcatgggcctcaa-tttttttttaacacccattagtatta 16799530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 665
Target Start/End: Complemental strand, 15480279 - 15480228
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 665  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  15480279 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 15480228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 665
Target Start/End: Original strand, 19523109 - 19523160
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 665  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  19523109 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 19523160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Complemental strand, 34756664 - 34756615
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  34756664 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 34756615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 650
Target Start/End: Complemental strand, 22987517 - 22987481
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    ||||||||||||||||||  |||||||||||||||||    
T  22987517 ggggtgcaaacagctcaaacgagctgggcctccctca 22987481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 682
Target Start/End: Original strand, 30853282 - 30853350
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaataccca 682  Q
    ||||||||||||||||||  ||||||||||||| |||   |||| |||||| ||| ||||| |||||||    
T  30853282 ggggtgcaaacagctcaaacgagctgggcctccttcaaggatggacctcaatttttttttttataccca 30853350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 650
Target Start/End: Complemental strand, 31881640 - 31881604
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    ||||||||||||||||||  |||||||||||||||||    
T  31881640 ggggtgcaaacagctcaaacgagctgggcctccctca 31881604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 599 - 663
Target Start/End: Original strand, 34855925 - 34855989
Alignment:
Q  599 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 663  Q
    |||||||| |||| |||| ||||||||||| ||  ||||||||||||||| ||  ||||||||||    
T  34855925 caggcccggcccttagggatgcaaacagctaaatggagctgggcctccctaaggtatgggcctca 34855989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 597 - 688
Target Start/End: Original strand, 4147 - 4238
Alignment:
Q  597 atcaggcccgaccctgag-gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 688  Q
    |||||| ||| ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||    
T  4147 atcagggccggccctgagagggtgcaaacagctcaacagagctgggcctcctccagtcatgggcctcaa-tttttttttaatacccactagta 4238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 599 - 673
Target Start/End: Original strand, 106379 - 106454
Alignment:
Q  599 caggcccgaccctgag-gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttt 673  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  106379 caggcccggccctgagagggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaaatttttttt 106454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 650
Target Start/End: Original strand, 1027 - 1063
Alignment:
Q  614 ggggtgcaaacagctcaacagagctgggcctccctca 650  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1027 ggggtgcaaacagctcaaacgagctgggcctccctca 1063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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