View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_42 (Length: 276)
Name: NF6019_low_42
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 6084524 - 6084258
Alignment:
| Q |
1 |
aattgtaggaacaaatcaagtgatcatcatcat---ttaccttcagatacttctctagtttccgagaatccgtctacatcgacagataagtttcatgacg |
97 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6084524 |
aattgtaggaacaaatcaagtgatcatcatcatcatttgccttcagatacttctctagtttccgagaatccatctacatcgacagataagtttcatgact |
6084425 |
T |
|
| Q |
98 |
ccacttacaagcgcgctgtaaatgaaattcctaacataccaatcaggagtcaaggacaacatcaacagcaacaaca---acaaatgagtctaccttttca |
194 |
Q |
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|
|| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
6084424 |
ccggttacaagcgcgccgtaaatgaaattcctaacataccaattaggagtcaaggacaacatcaacaacaacaacaacaacaaatgagtctaccttttca |
6084325 |
T |
|
| Q |
195 |
acatgtgggtgttggaatgaatattgttggtagtggaagcaataatagcaatcatagtagtaataat |
261 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6084324 |
acatgtgggtgttggaatgaatattgttggtagtggaagcaataatagcaatcatagtagtaataat |
6084258 |
T |
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