View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_50 (Length: 261)
Name: NF6019_low_50
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 16699918 - 16699671
Alignment:
| Q |
5 |
ccatcctttggtctgcctatacttctctttggtcattttttctgctgtcacaatgcattatgcaggtatatgtatatctacatttattgcatttgtttat |
104 |
Q |
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| T |
16699918 |
ccatcctttggtctgcctatacttctctttggtcattttttctgctgtcacaatgcattatgcaggtatatgtatatctacatttatcgcatttgtttat |
16699819 |
T |
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| Q |
105 |
agttgttccggaaaagtgtgtacatgtaatcaattttgatagttcttaaatctgcctgtatgcgaatacttgtacttgttttctttgtgttggtggtggt |
204 |
Q |
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| T |
16699818 |
agttattccggaaaagtgtgtacatgtaatcaattttgatagttcttaaatctgcctgtatgcgaatacttgtacttgttttctttgtgttggtggtggt |
16699719 |
T |
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| Q |
205 |
ttaaagaatatgttatatgactgctaggatcttttctgtttcctatgc |
252 |
Q |
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| T |
16699718 |
ttaaagaatatgttatatgactgctaggatcttttctgtttcctatgc |
16699671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 17674154 - 17673907
Alignment:
| Q |
5 |
ccatcctttggtctgcctatacttctctttggtcattttttctgctgtcacaatgcattatgcaggtatatgtatatctacatttattgcatttgtttat |
104 |
Q |
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| T |
17674154 |
ccatcctttggtctgcctatacttctctttggtcattttttctgctgtcacaatgcattatgcaggtatatgtatatctacatttatcgcatttgtttat |
17674055 |
T |
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| Q |
105 |
agttgttccggaaaagtgtgtacatgtaatcaattttgatagttcttaaatctgcctgtatgcgaatacttgtacttgttttctttgtgttggtggtggt |
204 |
Q |
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| T |
17674054 |
agttattccggaaaagtgtgtacatgtaatcaattttgatagttcttaaatctgcctgtatgcgaatacttgtacttgttttctttgtgttggtggtggt |
17673955 |
T |
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| Q |
205 |
ttaaagaatatgttatatgactgctaggatcttttctgtttcctatgc |
252 |
Q |
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| T |
17673954 |
ttaaagaatatgttatatgactgctaggatcttttctgtttcctatgc |
17673907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 13717161 - 13716928
Alignment:
| Q |
5 |
ccatcctttggtctgcctatacttctctttggtcattttttctgctgtcacaatgcattatgcaggtatatgtatatctacatttattgcatttgtttat |
104 |
Q |
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| T |
13717161 |
ccatcctttggtctccttatacttctcttcgctcattttttctgctgtcacaatgcattatgcaggtatatttt------catttatcgcatttgggtat |
13717068 |
T |
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| Q |
105 |
agttgttccggaaaagtgtgtacatgtaatcaattttgatagttcttaaatctgcctgtatgcgaatacttgtacttgttttctttgtgttggtggtggt |
204 |
Q |
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| T |
13717067 |
aattg---cg---aagtgtgtacatgtaatcaattttgatagttcttaaatctgcctgtatgcgaatactt-tacttgttttctttgtgttggtggtggt |
13716975 |
T |
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| Q |
205 |
ttaaagaatatgttatatgactgctaggatcttttctgtttcctatg |
251 |
Q |
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||| ||| ||||||||| |||| ||||| ||||||||||||| |||| |
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| T |
13716974 |
ttagagattatgttatacgactactaggttcttttctgtttcatatg |
13716928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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