View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_53 (Length: 255)
Name: NF6019_low_53
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 49954426 - 49954260
Alignment:
| Q |
16 |
ctaccatcactcaactagcctctatattgcagtctcaaactgaaagtctcacaaattttgtggaaacctctagttttatcttcccttctaaaagaaaggg |
115 |
Q |
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| T |
49954426 |
ctaccatcactcaactagcctctatattgcagtctcaaactgaaagtctcacaaattttgtggaaacctctagttttatcttcccttctaaaagaaaggg |
49954327 |
T |
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| Q |
116 |
tgtttatctcatatcactctctgtcggtacaatcatgtaggtcttcccccactatactactacacct |
182 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49954326 |
tgtttttctcatatcactctctgtcggtacaatcatgtaggtcttcccccactatactactacacct |
49954260 |
T |
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