View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_66 (Length: 242)
Name: NF6019_low_66
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_66 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 135290 - 135047
Alignment:
| Q |
1 |
atgggctcttctcaaaaccagagatgaaagaacgaccgag--gaaagagacatagttaagagtaagacagaaggagaaagaggcggagaaagttgtaata |
98 |
Q |
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| T |
135290 |
atgggttcttctcaaaaccagagatgaaagaacgaccgagaggaaagagacatagttaagagtaagacagaaggagaaagaggcggagaaagttgtaata |
135191 |
T |
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| Q |
99 |
cctcataccaacactcgatcatttattgtgtcgttgtatcacgtcattaaaaccttcatatttctcaaatttggtattttttaaagaaatttcataaaga |
198 |
Q |
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| T |
135190 |
cctcataccaacactcgatcatttattgtgtcgttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcataaaga |
135091 |
T |
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| Q |
199 |
tatggggtgtataagattccttcgaaccaaaaggtcttcatctc |
242 |
Q |
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| T |
135090 |
cgtggggtgtataagattccttcgaaccaaaaggtcttcatctc |
135047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 242
Target Start/End: Original strand, 34549691 - 34549838
Alignment:
| Q |
96 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaaaaccttcatatttctcaaatttggtattttttaaagaaatttcata |
194 |
Q |
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|||||||| ||||| ||||| |||||||||| |||||||||||||| ||||||| | |||||| ||| |||||||| ||||||| || | |||| || | |
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| T |
34549691 |
atacctcacaccaaacactcaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttagtattttctacataaatctcttc |
34549790 |
T |
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| Q |
195 |
aagatatggggtgtataagattccttcgaaccaaaaggtcttcatctc |
242 |
Q |
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| T |
34549791 |
aagacctggagtgtataagattccttcgtaccaaaaggtcttcatctc |
34549838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 242
Target Start/End: Complemental strand, 34377689 - 34377542
Alignment:
| Q |
96 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaaaaccttcatatttctcaaatttggtattttttaaagaaatttcata |
194 |
Q |
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|||||||| ||||| ||| | |||||||||| |||||||||||||| ||||||| | |||||| | | ||||||||||||| || || | ||||| ||| |
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| T |
34377689 |
atacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttggtatcttctacacaaattctata |
34377590 |
T |
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| Q |
195 |
aagatatggggtgtataagattccttcgaaccaaaaggtcttcatctc |
242 |
Q |
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|| | ||| ||||| |||||||| | | ||||||||||||||||||| |
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| T |
34377589 |
aatacctggagtgtacaagattccattgtaccaaaaggtcttcatctc |
34377542 |
T |
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