View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_70 (Length: 236)
Name: NF6019_low_70
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 135485 - 135704
Alignment:
| Q |
1 |
taggactttattaattaggagggatgcaattcctttttacactcgaaatttgatacaaaatgtccaaacatccatttgttcacatatttatactcttctt |
100 |
Q |
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| T |
135485 |
taggactttattaattaggagggatgcaattcctttttacaatcgaaatttgatacaaaatgtccaaacatccatttgttcacatatttatactcttctt |
135584 |
T |
|
| Q |
101 |
tttacttttcaatattctattgagactatattatctcagtactttcatactaatagtcatacactttgttatcttgaaatcatgtgtttctattgtttga |
200 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
135585 |
tttacttttcaatattctattaagacta-attatctcagtactttcatactaatagtcatacactttgttatcttgaaatcatgtgtatctattgtttga |
135683 |
T |
|
| Q |
201 |
ctgcattttgatcgccttttt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
135684 |
ctgcattttgatcgccttttt |
135704 |
T |
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