View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_72 (Length: 227)
Name: NF6019_low_72
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_72 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 5220596 - 5220816
Alignment:
| Q |
7 |
ggcacaccaccttcctccaccaacgcaaccttcgcctccggcaccgataccaatacactcaaaacataagccgatttatccaccatattcgattcaaaat |
106 |
Q |
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| T |
5220596 |
ggcacaccaccttcctccaccaacgcaaccttcgcctccggcaccgataccaatacactcaaaacataagccgatttatccaccatattcgattcaaaat |
5220695 |
T |
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| Q |
107 |
ccgccatcaactcaaccaacaccttcattatccccgctttcaccgctctcatcttattctccttcacagaacacagagtatacagcgccgtagacgcgtc |
206 |
Q |
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| T |
5220696 |
ccgccatcaactcaaccaacaccttcattatccccgctttcaccgctctcatcttattctccttcacagaacacagagtatacagcgccgtagacgcgtc |
5220795 |
T |
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| Q |
207 |
cttcttcccgcgtattcctcc |
227 |
Q |
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| T |
5220796 |
cttcttcccgcgtattcctcc |
5220816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 47470104 - 47469959
Alignment:
| Q |
82 |
ttatccaccatattcgattcaaaatccgccatcaactcaaccaacaccttcattatccccgctttcaccgctctcatcttattctccttcacagaacaca |
181 |
Q |
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| T |
47470104 |
ttatccaccatgttcgaatcaaaatccgccattaattcaactaaaggcttcattattccagcttttatcgctctgattttgttctcgttcaccgaacaca |
47470005 |
T |
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| Q |
182 |
gagtatacagcgccgtagacgcgtccttcttcccgcgtattcctcc |
227 |
Q |
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| T |
47470004 |
gcgagtataaagccgttgacgcatcctttttcccgcggattcctcc |
47469959 |
T |
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