View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_73 (Length: 225)
Name: NF6019_low_73
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 2919087 - 2919264
Alignment:
| Q |
19 |
aagaagcatcgatacttatataactcaaag-----aaacattttaatattatcaattatcaaggtcactattacaatgtagtgcacacatattatataac |
113 |
Q |
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| T |
2919087 |
aagaagcatcgatacttatataactcaaagtacaaaaacattttaatatta-------tcaaggtcactattacaatgtagtgcacacatattatataac |
2919179 |
T |
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| Q |
114 |
tcaatcacaaggttcaatcctagcttatactaggcattacccttaatcaaattagggaattagggaaggaaaattgaaaatatgggcacagaa |
206 |
Q |
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| T |
2919180 |
tcaagcacaaggttcaatcctagcttatactaagcattacccttaatca--------aattagggaaggaaaattgaaaatatgggcacagaa |
2919264 |
T |
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Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 2933924 - 2934028
Alignment:
| Q |
68 |
attatcaaggtcactattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaggcattacccttaatcaaatta |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
2933924 |
attatcaaggtcactattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaagcattacccttaatcatatta |
2934023 |
T |
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| Q |
168 |
gggaa |
172 |
Q |
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||||| |
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| T |
2934024 |
gggaa |
2934028 |
T |
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