View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6019_low_77 (Length: 219)
Name: NF6019_low_77
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_77 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 47178476 - 47178647
Alignment:
| Q |
22 |
aaattacttcaaagaaattgatccaatgtagtttttccattggatgatttgatcatttgagacgttgaccaaataaaccaaattt----attggtgattt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47178476 |
aaattacttcaaagaaattgatccaatgtagtttttccattggatgatttgatcatttgagacgttgaccaaataaaccaaatttattaattggtgattt |
47178575 |
T |
|
| Q |
118 |
tcttggcttctaacaatgattttcatggattcggattcacggctgtcataaaaaacctgcggtcacctaatat |
190 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
47178576 |
tcttcgcttctaacaatgattttcatggattcggattcacggctgtcat-aaaaacctgcagtcacctaatat |
47178647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University