View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_78 (Length: 218)
Name: NF6019_low_78
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 39823862 - 39823671
Alignment:
| Q |
12 |
gaaaaatattatatttaagaaaataaaacnnnnnnnnnnctctgaatttttagaagcataatgagataaacttcggctataacaaatgggatcaattcct |
111 |
Q |
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| T |
39823862 |
gaaaaatattatattttagaaaataaaacttttttttttctctgaatttttagaagcataatgagataaacttcggctataacaaatgggatcaattcct |
39823763 |
T |
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| Q |
112 |
cacaaaactttgtgagattgaacaattggaacaaaacctactagaattaatgcatgcact--gagtgctgtaacaatgaaaaagcctaaagc |
201 |
Q |
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| T |
39823762 |
cacaaaactttgtgagattgaacaattggaacaaaacctactagaattaatgcatgcactgagagtgctgtaacaatgaaaaagcctaaagc |
39823671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 39917827 - 39917679
Alignment:
| Q |
51 |
ctctgaatttttagaagcataatgagataaacttcggctataacaaatgggatcaattcctcacaaaactttgtgagattgaacaattggaac--aaaac |
148 |
Q |
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| T |
39917827 |
ctctgaatttttagaagcataatgagataaactatggctataacaaatgggatcaattccacagaaaactatgtgagattgaacaattggaacaaaaaac |
39917728 |
T |
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| Q |
149 |
ctactagaattaatgcatgcactgagtgctgtaacaatgaaaaagcctaaagc |
201 |
Q |
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| T |
39917727 |
ctactag----aatgcattcactgagtgctctaacaaacaaaaagcctaaagc |
39917679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 39926699 - 39926590
Alignment:
| Q |
69 |
ataatgagataaacttcggctataacaaatgggatcaattcctcacaaaactttgtgagattgaacaattggaacaaaacctactagaattaatgcatgc |
168 |
Q |
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| T |
39926699 |
ataatgagatgaatttctgctatagcaaatgggatcaattccacacaaaactat---agattgaacaattggaacaaaacctactag----aatgcatgc |
39926607 |
T |
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| Q |
169 |
actgagtgctgtaacaa |
185 |
Q |
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| T |
39926606 |
actgagtgctctaacaa |
39926590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 32018569 - 32018606
Alignment:
| Q |
63 |
agaagcataatgagataaacttcggctataacaaatgg |
100 |
Q |
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| T |
32018569 |
agaagcataatgagataaatttcggctataacgaatgg |
32018606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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