View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_8 (Length: 607)
Name: NF6019_low_8
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 34 - 597
Target Start/End: Original strand, 40924488 - 40925068
Alignment:
| Q |
34 |
gcagtgtttaaaaaccggttaataacaatgattaaactaaatactaagtaattatcagaacttcaacaaaattaacagaaatattaactgaagtgtccta |
133 |
Q |
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| T |
40924488 |
gcagtgtttaagaaccagttaataacaatggttaaactaaatactaagtaattatcagaacttcaacaaaattaacagaaatattaactgaagtgtccta |
40924587 |
T |
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| Q |
134 |
tatgaagatgataattcttgaaacaacaaggtagaattgcaaaccagaaaacataaaa---------------------atactagcaagtgctccacag |
212 |
Q |
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| T |
40924588 |
tatgaagatgataattcttgaaacaacaaggtagaattgcaaaccagaaaacataaaataataataaaatagcataaaaatactagcaagtgctccacag |
40924687 |
T |
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| Q |
213 |
aaaacttcattccgaccatgtatcattcaaaaccctccaatttcaatcagcaacagctagctagtttcccattgacgacaacatgccttgttcttggtcc |
312 |
Q |
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| T |
40924688 |
aaaacttcattccgaccatatatcattcaaaacccgccaatttcaatcagcaacagctagctagtttcccattgacgacg---tgccttgttcttggtcc |
40924784 |
T |
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| Q |
313 |
ttcccagcttgtctcagaattcttctccagaacggatgagtttcaaaaaggcgatgaacatcctcagagaaatgtacttgttgttacctgcattgtgtct |
412 |
Q |
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| T |
40924785 |
ttcccagcttgtctcagaattcttctccagaacggatgagtttcaaaaaggcgatgaacatcctcaaagaaatgtacttgttgttacctgtattgtgtct |
40924884 |
T |
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| Q |
413 |
tcattggactcaatcttgctccggcggtagtgcctgcacgacgttcaactcagtgaggggcaaaggtgccaccgctgcccgtggtggtttgggaggtgaa |
512 |
Q |
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| T |
40924885 |
tcattggactcaatcttgctccggcggtagtgcctgcacgacg-tcaactcagtgaggggcaaaggtgccaccgctgcccgtggtggtttgggaggtgaa |
40924983 |
T |
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| Q |
513 |
cgcagccattttaagaaagttggactgtatgccaagatcaatatcactgcaatagcaaccacaacaatggaagcaaacagtataa |
597 |
Q |
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| T |
40924984 |
cgcagccattttaagaaagttggaccgtatgccaagatcaatatcactgcaatagcaaccacaacaatggaagcaaacagtataa |
40925068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 34990691 - 34990727
Alignment:
| Q |
91 |
gaacttcaacaaaattaacagaaatattaactgaagt |
127 |
Q |
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| T |
34990691 |
gaacttcaacaaaattaacagaaatattaactgaagt |
34990727 |
T |
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