View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6019_low_9 (Length: 594)
Name: NF6019_low_9
Description: NF6019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6019_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 23 - 586
Target Start/End: Complemental strand, 28081694 - 28081131
Alignment:
| Q |
23 |
ttccagaaaatttaatctccttgtgcatcaccaattttggaagaaagaagagacaaaagctgttcttgtgtgtaaaatctacttcccatgttaacagaag |
122 |
Q |
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| T |
28081694 |
ttccagaaaatttaatctccttgtgcatcaccaattttggaagaaagaagagacaaaagctgttcttgtgtgtaaaatctacttcccatgttaacagaag |
28081595 |
T |
|
| Q |
123 |
cttgttgaatcatcaaatcattcacaacagacacactggcatgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgatt |
222 |
Q |
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| T |
28081594 |
cttgttgaatcatcaaatcattcacaacagacacactagcatgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgatt |
28081495 |
T |
|
| Q |
223 |
cttcttgctacattgaatcctaatcatagcatcccaacccataatcttcacatcaatatccaagtcaattaacttagaagggcttgttgagctcgttgtt |
322 |
Q |
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| T |
28081494 |
cttcttgctgcattgaatcctaatcatagcatcccaacccataatcttcacatcaatatccaagtcaattaacttagaagagcttgttgagcttgttgtt |
28081395 |
T |
|
| Q |
323 |
ttctccagttctttatctaatggaattggattttgactttgatttttgcttgcaacaagttctaattccttctttgttgcacctaattgtatctccaatt |
422 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28081394 |
ttctccttttctttatctaatggaattggattttgactttgatttttgcttgcaacaagttctaattccttctttgttgcacctaattgtttctccaatt |
28081295 |
T |
|
| Q |
423 |
cgcctttcgacgattccagcccttgtagcttcgatttcaattcatttatataagaaatagcatcgcctaggagcgatgctttgtccattttagaaacatt |
522 |
Q |
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| T |
28081294 |
caccttttgacgattccagcccttgtagcttcgatttcaattcgtttatataagatatagcatcgcctagcagcgatgctttgtccatcttagaaacatt |
28081195 |
T |
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| Q |
523 |
tggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctctgct |
586 |
Q |
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| T |
28081194 |
tggaaccacagcacgtagagcatagaatttttggttaagcttttctcttctttgtctctctgct |
28081131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 586
Target Start/End: Complemental strand, 9194878 - 9194792
Alignment:
| Q |
500 |
gctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctctgct |
586 |
Q |
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| T |
9194878 |
gctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttctctctcctttgtctctctgct |
9194792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 122 - 282
Target Start/End: Complemental strand, 12886381 - 12886221
Alignment:
| Q |
122 |
gcttgttgaatcatcaaatcattcacaacagacacactggcatgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgat |
221 |
Q |
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|||||||| |||||||||||||| || ||||||||||||||||| | ||| || ||||| | || | ||||| ||||| ||| |||| |||||||| | |
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| T |
12886381 |
gcttgttgtatcatcaaatcatttaccacagacacactggcatggtgcacttctaggtcaagctccattaacgctgccattaacctcgctgcagggtggt |
12886282 |
T |
|
| Q |
222 |
tcttcttgctacattgaatcctaatcatagcatcccaacccataatcttcacatcaatatc |
282 |
Q |
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| T |
12886281 |
ttttcttactgcattggacccttatcattgcatcccaacctataatcttcacgtcgatatc |
12886221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 582
Target Start/End: Complemental strand, 12886003 - 12885921
Alignment:
| Q |
500 |
gctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctc |
582 |
Q |
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||||||||||| || |||||||| ||||| || || || || ||||||||| |||| || ||||| ||||||||||| ||||| |
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| T |
12886003 |
gctttgtccatctttgaaacattaggaacaaccgctcgaagtgcatagaatctctgattcagcttctctcttctttgcctctc |
12885921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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